BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2028.p
         (850 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981008|ref|YP_001353750.1| protein-PII uridylyltransferas ...  1352   0.0  

>gi|152981008|ref|YP_001353750.1| protein-PII uridylyltransferas
           [Janthinobacterium sp. Marseille]
          Length = 850

 Score = 1352 bits (3499), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 640/850 (75%), Positives = 726/850 (85%)

Query: 1   MPTLAITLKKQLKAARQQAIEVFQSNHKTEQLLAQLRRNVDEALTQAWEELGMSGNAALV 60
           MP+LAI LK++LKA R+  I+ F  + K EQLL QLR NVD AL++AW    +  +AALV
Sbjct: 1   MPSLAIALKEELKAERKIVIDRFLQDGKAEQLLTQLRINVDAALSKAWIAFDLPESAALV 60

Query: 61  AVGGYGRGELFPHSDVDVLILLDKTPDAAKKEKLESLVQLFWDIGLEIGHSIRTIDECLD 120
           AVGGYGRGELFPHSDVDVLILL + P+AA + KLE LVQLFWDIGLEIGHSIRTIDECL+
Sbjct: 61  AVGGYGRGELFPHSDVDVLILLKEAPNAALQAKLEELVQLFWDIGLEIGHSIRTIDECLN 120

Query: 121 ESAADITVQTSLLEARLVTGNRALFKQLQERYQAALDPLAFFQAKTLEMRQRHVKYEDTP 180
           E+ ADITVQTSLLEARLV GN + F+ L+ R  AA+DP AFFQAKTLE+RQRH KYEDTP
Sbjct: 121 EAEADITVQTSLLEARLVIGNASQFQLLKVRCNAAMDPQAFFQAKTLELRQRHAKYEDTP 180

Query: 181 YSLEPNCKESPGGLRDLQVILWVAKAAGLGNSWAELAQHGMLTSTEARQLRQKERAFKDI 240
           YSLEPNCKESPGGLRDLQVILWV+KAAGLGNSW ELA  G++T TEARQL QKER+ KD+
Sbjct: 181 YSLEPNCKESPGGLRDLQVILWVSKAAGLGNSWRELAVQGLITPTEARQLTQKERSLKDV 240

Query: 241 RIRLHILTDRREDRLVFDIQTPIAETFGFKTTDTRRASEYLMQRYYWAAKAVTQLNTILL 300
           RIRLHI+ +R EDRLVFDIQT IAE+ GFKTT+TRRASEYLMQRYY AAKAVTQLN ILL
Sbjct: 241 RIRLHIIANRHEDRLVFDIQTAIAESIGFKTTETRRASEYLMQRYYLAAKAVTQLNAILL 300

Query: 301 QNIEAHLFPQQSVPRPLNERFSEVNGFLDIAHDNIFEETPSAMLEVFLMLSEHPELKDMS 360
           QNIEA LFPQ + P  +NE F+EVNGF+DIA+D+ FE  PS MLEVFL+LS HPELK M+
Sbjct: 301 QNIEAQLFPQMTSPVAINEDFNEVNGFIDIANDDTFEVKPSTMLEVFLLLSLHPELKGMT 360

Query: 361 ARTLRALWHARFKIDNAFRANPENHRLFMQIIQSKRGITHALRGMNATSVLGRYLPNFRQ 420
           ART R+LW+ARFKIDN FR +P N  LFM+I+Q+ +GITHALR MN TSVLGRYLPNFR+
Sbjct: 361 ARTFRSLWNARFKIDNQFRQDPVNRALFMKILQAPQGITHALRRMNQTSVLGRYLPNFRK 420

Query: 421 IVGQMQHDLFHVYTVDQHILMVVRNVRRFTMSEHAHEYPFCSQLMANFGQPWVLYVAALF 480
           IVGQMQHDLFHVYTVDQHI+MVVRNVRRF +SEHAHEYPFCSQL ANF QPW+LY+AALF
Sbjct: 421 IVGQMQHDLFHVYTVDQHIMMVVRNVRRFMLSEHAHEYPFCSQLAANFSQPWLLYIAALF 480

Query: 481 HDIAKGRGGDHSKLGMADARAFCVQHGISEENTELIVFLVEQHLAMSHVAQKQDMSDPDV 540
           HDIAKGRGGDHS+LG  DAR FCV HG++EE TEL+VFLVE HL MS +AQKQD+SDP+V
Sbjct: 481 HDIAKGRGGDHSELGKEDARIFCVDHGLTEEETELVVFLVENHLMMSQIAQKQDLSDPEV 540

Query: 541 ITAFAQLVKDERHLTALYLLTVADIRGTSPKVWNAWKGKLLEDLYRMTLRVLGGEAPSAD 600
           I+ FA+LVKDERHLTALYLLTVADIRGTSPKVWNAWKGKLLEDLY MTLR LGG+APSAD
Sbjct: 541 ISNFARLVKDERHLTALYLLTVADIRGTSPKVWNAWKGKLLEDLYNMTLRALGGDAPSAD 600

Query: 601 RELKNTQQEAIKTLRLYGLPADAHEPLWKQLDVAYFLRHDASDIAWQTRCFYDKVDTGVP 660
           RELKN Q+EA+K+LRLYGL   AHE LWKQLDV YFLRHDA+DIAWQTR  YDK+D+  P
Sbjct: 601 RELKNRQEEALKSLRLYGLSTHAHEALWKQLDVVYFLRHDAADIAWQTRTLYDKIDSPTP 660

Query: 661 LVRCRLAPIGEGVQVAVYTPDRPDLFARICSYFDEKSFSIFDAKIHTTRNNYALDAFLIN 720
           +V+CRLAPIGEG+QV VY  D+PDLFARICSYFD K+FSI DAKIHTT++ Y LD FLI 
Sbjct: 661 VVKCRLAPIGEGLQVTVYVKDQPDLFARICSYFDRKNFSILDAKIHTTKHGYGLDTFLIT 720

Query: 721 APVFAKNYRDIINLIEHELGALLQSDAPLPPPSKARLSRLSRTFPVNPAVDLRPDERGQY 780
            P FA NYRD+I+LIEHEL  +L +   LP P K RLSRL R FP  P VDLRPDERG+Y
Sbjct: 721 EPAFADNYRDLISLIEHELTEVLTAQLDLPSPCKGRLSRLCRNFPATPTVDLRPDERGRY 780

Query: 781 YLLSVSANDRAGLLYSISNVLAKYKINLHTAKVMTLGERVEDVFLIDGPGLSQPRNQILL 840
           YLL++SANDR GLLYS++N+LAKYK+NLHTAKVMTLGERVEDVFL+DG  L  PR+QI L
Sbjct: 781 YLLTISANDRNGLLYSVANILAKYKVNLHTAKVMTLGERVEDVFLVDGQMLDNPRSQIQL 840

Query: 841 ETDLLKTLRI 850
           ETDLL  LR+
Sbjct: 841 ETDLLDALRV 850


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,919,312
Number of extensions: 78279
Number of successful extensions: 205
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 1
Length of query: 850
Length of database: 1,221,021
Length adjustment: 91
Effective length of query: 759
Effective length of database: 884,594
Effective search space: 671406846
Effective search space used: 671406846
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 134 (56.2 bits)