BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2026.p
         (161 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982496|ref|YP_001355243.1| hypothetical protein mma_3553 [...   194   3e-51

>gi|152982496|ref|YP_001355243.1| hypothetical protein mma_3553
           [Janthinobacterium sp. Marseille]
          Length = 154

 Score =  194 bits (492), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 92/152 (60%), Positives = 116/152 (76%)

Query: 10  HFTLARNAFGRLVLTDAQGGLHEHVIPVRAFPITSPESGLSLVSSDGHELAWIDTLDQVD 69
           +F L RNAFG+L+ +     + E V+PVR+FPI +P+ G+++VS DGHELAWI+ L  + 
Sbjct: 3   NFQLTRNAFGKLIYSAPGEEVQEGVVPVRSFPIAAPDIGIAIVSPDGHELAWIEKLSDLP 62

Query: 70  AATRRLIEEELASREFMPEIERIVSVSTFATPSDWTVQTTRGTTTFTLKGEEDIRRLAAP 129
            ATR L+EEELASREF+PEI++I  VS FA+PS WT+ T RG  T  LKGEEDIRR+   
Sbjct: 63  DATRLLLEEELASREFLPEIKQIKRVSVFASPSTWTLATNRGDATLVLKGEEDIRRIGES 122

Query: 130 ALLIADSHGIQFLIRDQKALDKHSRKILDRFL 161
           AL+IAD+HGIQFLIRD   LDK SRK+LDRFL
Sbjct: 123 ALIIADTHGIQFLIRDLNKLDKTSRKLLDRFL 154


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 297,030
Number of extensions: 9590
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 85
Effective length of database: 940,049
Effective search space: 79904165
Effective search space used: 79904165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)