BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2023.p (857 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981679|ref|YP_001355246.1| cyanophycin synthetase [Janthin... 1283 0.0 gi|152981863|ref|YP_001355245.1| cyanophycin synthetase [Janthin... 494 e-140 >gi|152981679|ref|YP_001355246.1| cyanophycin synthetase [Janthinobacterium sp. Marseille] Length = 853 Score = 1283 bits (3319), Expect = 0.0, Method: Compositional matrix adjust. Identities = 617/854 (72%), Positives = 724/854 (84%), Gaps = 2/854 (0%) Query: 1 MDVSRIRALRGPNLWSRHTAVEAIVSCPENERVIADMPGFELRLRARFPQIGFLEPDGGK 60 M++SR+RALRGPNLWSRHT++EAIVSC E+ I +PGFE RLRARFP+I FLEP + Sbjct: 1 MEISRVRALRGPNLWSRHTSIEAIVSCNGIEQTILAIPGFEDRLRARFPEIKFLEP--AE 58 Query: 61 QVVSMAHALAAAALALQSQAGCPVTFSRTVSTVETGIYQVVVEYSEEEVGRLAFDLALEL 120 SMAH L +AA+ LQ+QAGCPVTFSRT+ TVE GIYQVVVEY+EE VGRLAF+LA L Sbjct: 59 TTFSMAHVLESAAIGLQAQAGCPVTFSRTIQTVEPGIYQVVVEYTEEAVGRLAFELAQNL 118 Query: 121 VRAAQADTPFDLTGALARIRELDEDVRLGPSTASIVNAALKRGIPYRRLTQGSMVQFGWG 180 RAA DTPFDL ALA +RELDED+RLGPST SIV+AA+ RGIP+RRLT+GSMVQFGWG Sbjct: 119 CRAATEDTPFDLATALASLRELDEDIRLGPSTGSIVDAAVARGIPFRRLTEGSMVQFGWG 178 Query: 181 SRQKRIQAAETSNTSAIAESIAQDKDLTKMLLHAAGVPVPNGRVVETVEDALKAAEEIGS 240 SRQKRIQAAET TSAIAESIAQDK++TK+LL AAGVPVP+G V T E+A +AA +IG+ Sbjct: 179 SRQKRIQAAETGFTSAIAESIAQDKEMTKVLLAAAGVPVPDGASVTTAEEAWQAARDIGA 238 Query: 241 AVVIKPLDGNQGKGVAVNISTPEQITRAFNNAALISDEVIVERYLPGHDFRLLVIGKTLV 300 VVIKP DGNQGKGVAVN+ T E++ AF A I +V+VERYLPGHD+RLLV+GK L+ Sbjct: 239 PVVIKPRDGNQGKGVAVNMKTEEEVKTAFAVAYEICSDVVVERYLPGHDYRLLVVGKQLI 298 Query: 301 AAARRDPPQVIGDGVHTIRQLIDQVNADPLRGDGHATSLTKIRLDDIALSVLSGQNLDPE 360 AAARR PP+V+GDGV TIRQLIDQVN DPLRGDGHA+ LTKI++D++ L+ L+ N E Sbjct: 299 AAARRAPPEVLGDGVQTIRQLIDQVNLDPLRGDGHASPLTKIKVDNLTLATLAKINYTLE 358 Query: 361 AIPAQGVRVVLRNNANLSTGGTATDVTDDVHPDVAARAIAAAQMVGLDICGVDVVCNSVH 420 ++P +GV+VVLRNNANLSTGGTATDVTDDVHPD+AARA+ AAQM+GLDICG+D+VC SV Sbjct: 359 SVPPKGVQVVLRNNANLSTGGTATDVTDDVHPDLAARAVEAAQMIGLDICGIDLVCESVL 418 Query: 421 MSLEEQGGGIVEVNAAPGLRMHLSPSYGKARDVGEAIISTMYDDGDDGRIPVVAVAGTNG 480 +LEEQGGG+VEVNAAPGLRMH+ PS+GK R VGEAIISTM+D+GDDGRIPVVAVAGTNG Sbjct: 419 KTLEEQGGGVVEVNAAPGLRMHIKPSFGKGRPVGEAIISTMFDEGDDGRIPVVAVAGTNG 478 Query: 481 KTTTVRLITHLLAKTGLRVGMTNTDGVYIDGQRTDTGDCSGPRSARNVLFHPDVDAAVLE 540 KTTTVRLI H+L RVGMT+TDGVYI+ +R DTGDCSGPRSARNVL HPDVDAAVLE Sbjct: 479 KTTTVRLIAHILQGNKYRVGMTSTDGVYIENKRIDTGDCSGPRSARNVLMHPDVDAAVLE 538 Query: 541 TARGGVLREGLGFDRCAVAVVTNIGMGDHLGLSYISTVEDLAVVKRVIVENVASTGTAVL 600 TARGGVLREGLGFDRC VAVVTNIG+GDHLGL++ISTVEDLAVVKRVIV+NVA GTAVL Sbjct: 539 TARGGVLREGLGFDRCNVAVVTNIGVGDHLGLNFISTVEDLAVVKRVIVQNVAPNGTAVL 598 Query: 601 NAADPMVAKMATSCPGSVTFFALDPTHPIMATHRAQGHRIVYRDGDAIVAAQGTFEKRLK 660 NAADPMVA MA SCPGSVTFFA D H ++ATHRAQGHR++++DG+ IV ++G FE R++ Sbjct: 599 NAADPMVANMAGSCPGSVTFFAQDSNHAVLATHRAQGHRVLFQDGNVIVLSEGKFEHRIQ 658 Query: 661 LSGIPLTRSGAIGFQVENVMASVGAAWALNLDWEQITGALASFISDSGTAPGRFNLFDYK 720 LS IP+T +G +GFQVEN MA++GAAW L LDW + L +F + + + PGRFN+F +K Sbjct: 659 LSDIPITHNGTVGFQVENAMAAIGAAWGLGLDWNVVLEGLRTFENSASSTPGRFNIFSHK 718 Query: 721 GATLIADYGHNPDAIQALIKAVDSMPAKRRSVVISGAGDRRDADITRQTELLGDAFDEVV 780 GAT+IADYGHNPDAI+AL +AV+ MPAKRR VVISGAGDRRD D+ RQT++LGDAFD+V+ Sbjct: 719 GATVIADYGHNPDAIEALTRAVEGMPAKRRMVVISGAGDRRDEDLRRQTQILGDAFDDVI 778 Query: 781 LYQDQCQRGREDGEVIALLRQGLGKATRTADVKEINGEFLAIDTALANLQPGDLCLILID 840 LY+DQCQRGR DGEV+ALLR GL A RT +EI GEF+AIDTALA L+ GDLCLIL+D Sbjct: 779 LYEDQCQRGRADGEVLALLRDGLSNAKRTRFTQEIQGEFIAIDTALAKLEAGDLCLILVD 838 Query: 841 QVEEALVHIDQRVK 854 QVEEAL HI VK Sbjct: 839 QVEEALAHIAANVK 852 >gi|152981863|ref|YP_001355245.1| cyanophycin synthetase [Janthinobacterium sp. Marseille] Length = 722 Score = 494 bits (1272), Expect = e-140, Method: Compositional matrix adjust. Identities = 294/669 (43%), Positives = 402/669 (60%), Gaps = 26/669 (3%) Query: 1 MDVSRIRALRGPNLWSRHTAVEAIVSCPENERVIAD-MPGFELRLRARFPQI-------- 51 +D+ + +LRGPN+W+ +EA V E E ++ +PGF RL A P + Sbjct: 6 IDIIDVLSLRGPNIWTYRPVLEAWVDIGELEDFPSNTIPGFYERLTAWLPSLVEHHCGVG 65 Query: 52 ---GFLEPDGGKQVVSMAHALAAAALALQSQAGCPVTFSRTVSTVETGIYQVVVEYSEEE 108 GFL ++ H + + LQ+ AG F + T + G+Y+VVV EE Sbjct: 66 VHGGFLMR--LREGTWPGHIMEHVMIELQNLAGMQSGFGKARETSKRGVYKVVVRARHEE 123 Query: 109 VGRLAFDLALELVRAAQADTPFDLTGALARIRELDEDVRLGPSTASIVNAALKRGIPYRR 168 V R A A +LV AA D PFD+ GA+ +R++ E V LGPST IV+AA R IP R Sbjct: 124 VSRAALVAARDLVMAAIQDKPFDVKGAVDNLRDILESVALGPSTGCIVDAATDRRIPSMR 183 Query: 169 LTQGSMVQFGWGSRQKRIQAAETSNTSAIAESIAQDKDLTKMLLHAAGVPVPNGRVVETV 228 L +G++VQ G+G+RQ+RI AET TSAIAE+I+ DK+LTK LL + GVPVP GR+V +V Sbjct: 184 LNEGNLVQLGYGARQRRIWTAETDQTSAIAETISSDKELTKTLLQSCGVPVPEGRIVNSV 243 Query: 229 EDALKAAEEIGSAVVIKPLDGNQGKGVAVNISTPEQITRAFNNAALISDEVIVERYLPGH 288 DA AAE IG VVIKPLDGN G+GV+ N++ + I AF A S +VIVER++ G+ Sbjct: 244 ADAWDAAESIGLPVVIKPLDGNHGRGVSTNLNNQKDIEAAFLLAEQESSDVIVERFVRGN 303 Query: 289 DFRLLVIGKTLVAAARRDPPQVIGDGVHTIRQLID-QVNADPLRGDGHATSLTKIRLDD- 346 + RLL+IG LVAAAR + ++ DGV TI +LI+ Q+N+DP RG L I +D+ Sbjct: 304 EHRLLIIGGRLVAAARGEEASIVSDGVSTISELINSQLNSDPRRGSSEDCPLNLILIDEA 363 Query: 347 ----IALSVLSGQNLDPEAIPAQGVRVVLRNNANLSTGGTATDVTDDVHPDVAARAIAAA 402 + L L+ Q E+IP G +++++ N N+ A DVTD VHP VAA A AA Sbjct: 364 DDPRVVLLELARQGYTTESIPPAGEKILVQRNGNV-----AFDVTDQVHPSVAAAASLAA 418 Query: 403 QMVGLDICGVDVVCNSVHMSLEEQGGGIVEVNAAPGLRMHLSPSYGKARDVGEAIISTMY 462 ++VGLDI GVD+V + LEEQGG IVEVNA PGL MHL P+ G AR VG AI+ ++ Sbjct: 419 RIVGLDIAGVDLVAEDISRPLEEQGGAIVEVNAGPGLLMHLKPADGPARPVGRAIVDHLF 478 Query: 463 DDGDDGRIPVVAVAGTNGKTTTVRLITHLLAKTGLRVGMTNTDGVYIDGQRTDTGDCSGP 522 + +GRIP+V V G++G T RLI LL G VG+ DG+++ + + Sbjct: 479 AEDQNGRIPIVGVTGSHGSTVVSRLIAWLLHLQGKYVGLACRDGLFLRQRHVLQKESDNW 538 Query: 523 RSARNVLFHPDVDAAVLETARGGVLREGLGFDRCAVAVVTNIGMGDHLGLSYISTVEDLA 582 ++ R VL + V+AAV E + +L EGL +D C V VVTNI D L YI + + Sbjct: 539 QATRQVLLNRMVEAAVFENSSKAILSEGLAYDWCQVGVVTNIDPTDKLPEFYIEDADQMT 598 Query: 583 VVKRVIVENVASTGTAVLNAADPMVAKMATSCPGSVTFFALDPTHPIMATHRAQGHRIVY 642 V R V+ V G AVLNAAD VA+ A+ C GSV FFA P+ P++ H+A+G R V+ Sbjct: 599 KVARTQVDIVLPDGVAVLNAADARVAEFASLCDGSVIFFAASPSTPVIVAHQAEGGRSVF 658 Query: 643 -RDGDAIVA 650 RDG+ ++A Sbjct: 659 VRDGNIVLA 667 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,926,630 Number of extensions: 81749 Number of successful extensions: 273 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 265 Number of HSP's successfully gapped: 2 Length of query: 857 Length of database: 1,221,021 Length adjustment: 91 Effective length of query: 766 Effective length of database: 884,594 Effective search space: 677599004 Effective search space used: 677599004 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)