BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2020.p
         (688 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981161|ref|YP_001353755.1| DNA ligase (polydeoxyribonucleo...  1073   0.0  

>gi|152981161|ref|YP_001353755.1| DNA ligase
           (polydeoxyribonucleotide synthase) [Janthinobacterium
           sp. Marseille]
          Length = 692

 Score = 1073 bits (2775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/688 (77%), Positives = 590/688 (85%), Gaps = 14/688 (2%)

Query: 1   MQDDLFSAA----------RPPQGAPEWLLRARALRDELNRHNHSYYVLDEPSIPDAEYD 50
           MQ DLFS A           P    P    RA  LRDELNRHN+SY+VLD PSIPDAEYD
Sbjct: 1   MQPDLFSTASQADANATPEEPDASNPA--ARAAWLRDELNRHNYSYHVLDNPSIPDAEYD 58

Query: 51  RLFQELQALETAHPELLTADSPTQRVGAGPLPQFEPVRHDIPMLSLGNGFTDEDIEAFDK 110
           +LF+ELQALET+HPELL  DSPTQRVGA  L  F  V H +PMLSLGNGF DEDI AFDK
Sbjct: 59  KLFRELQALETSHPELLVFDSPTQRVGALALSAFPQVTHSVPMLSLGNGFEDEDIIAFDK 118

Query: 111 RVRDGLETLQEVRYATELKFDGLAISLRYENGVLVQAATRGDGTTGENVTANIRTVRAIP 170
           RV DGL +  E+ YATELKFDGLAI+LRYE+G+LV+AATRGDG TGENVT NIRTVRAIP
Sbjct: 119 RVSDGLNS-TEIEYATELKFDGLAINLRYEDGILVEAATRGDGATGENVTTNIRTVRAIP 177

Query: 171 LRLHGENVPQVIDVRGEVLMYKDDFARLNLRQRDAGQKEFANPRNAAAGSLRQLDSRITA 230
           LRLH    P+V+DVRGEV+MYK D A+LN RQRDAG KEFANPRNAAAGSLRQLDSRITA
Sbjct: 178 LRLHTATPPKVLDVRGEVMMYKADLAKLNARQRDAGGKEFANPRNAAAGSLRQLDSRITA 237

Query: 231 QRTLRFFAYGIGVLEGAEMPASHSALLDWYQQLGLPVCKERAVVTGAAGLLDFFRGIGTK 290
           QRTLRFFAYGIG+LEGAEMP SHSALLDWY +LGLPVC ERAVV GAAGLL+F++ +G K
Sbjct: 238 QRTLRFFAYGIGMLEGAEMPPSHSALLDWYAELGLPVCAERAVVKGAAGLLEFYKAVGQK 297

Query: 291 RESLPYEIDGVVYKVDRLDQQKHLGFVSRAPRFALAHKFPAQEALTVVQDIEVQVGRTGA 350
           R +LPYEIDGVVYKV+R++QQ+ LGFVSRAPR+A+AHKFPA+EALT VQ IEVQVGRTGA
Sbjct: 298 RPTLPYEIDGVVYKVNRVEQQQQLGFVSRAPRYAIAHKFPAEEALTTVQGIEVQVGRTGA 357

Query: 351 ITPVARLNPVFVGGVTVTNATLHNEDEVRRKDIQIGDTVIVRRAGDVIPEVVACLPEKRP 410
           ITPVARL PV VGGVTVTNATLHNEDEVRRKDIQIGDTVIVRRAGDVIPEVVA +PEKRP
Sbjct: 358 ITPVARLAPVLVGGVTVTNATLHNEDEVRRKDIQIGDTVIVRRAGDVIPEVVAYVPEKRP 417

Query: 411 ADARAFVMPGACPVCGSPIVRAEDEAVARCSGGWLKCSAQRKGGLQHFASRRAMDIEGLG 470
            DA+ FVMP  CPVC SPIV+ EDEA+ARCSGGW+KC+AQRKGGL HF SRRAMD+EGLG
Sbjct: 418 VDAQPFVMPTNCPVCNSPIVKLEDEAIARCSGGWVKCAAQRKGGLLHFVSRRAMDVEGLG 477

Query: 471 EQLVEQLVDRQVVNTPADLYRLGLSALAELDRMAEKSAQNVLDALQKSKTTTLARFIYAL 530
           +QLVEQLVD+ ++ T ADLY+LG  ALAELDRMA+KSAQNV+ AL+KSK+TTLARFIYAL
Sbjct: 478 DQLVEQLVDKHIITTAADLYKLGFRALAELDRMADKSAQNVMAALEKSKSTTLARFIYAL 537

Query: 531 GIRHVGEATAKELARHFGGIDRLLAASEEQLLEVADIGPVVASSIRAFFSDPVNLELVEQ 590
           GIRHVGEATAKELARHFG ++ LL ASEEQLLEVADIGPVVA SIR+F SDP+N+EL+EQ
Sbjct: 538 GIRHVGEATAKELARHFGNLEALLQASEEQLLEVADIGPVVAQSIRSFLSDPLNMELIEQ 597

Query: 591 LRAVGIHWPEEQGVDTGTKHLAGKTFVLTGTLPNLSRDEAAQLIEAAGGKVSGSVSKKTS 650
           L+A G+ WPE   V+   K  AGKTFVLTGTLP LSRD+AA+ IEAAGGKV+GSVSKKTS
Sbjct: 598 LQAAGVRWPEHV-VENKPKPFAGKTFVLTGTLPTLSRDQAAEKIEAAGGKVAGSVSKKTS 656

Query: 651 YVVAGAEAGSKLAKAEELGIAILDEDGL 678
           YVVAGA+AGSKLAKAEELGI ILDE  L
Sbjct: 657 YVVAGADAGSKLAKAEELGITILDESAL 684


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,579,055
Number of extensions: 68161
Number of successful extensions: 195
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 598
Effective length of database: 888,291
Effective search space: 531198018
Effective search space used: 531198018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)