BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2019.p
         (439 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982108|ref|YP_001353756.1| hypothetical protein mma_2066 [...   411   e-116

>gi|152982108|ref|YP_001353756.1| hypothetical protein mma_2066
           [Janthinobacterium sp. Marseille]
          Length = 372

 Score =  411 bits (1056), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/438 (52%), Positives = 291/438 (66%), Gaps = 66/438 (15%)

Query: 2   MMDLQTSLIILGAVFVAGVITYNKWQEHKARKTVERAFSSSHDDVLMSPDEPGLAPTEPV 61
           M DLQTSL ++G V V GVI+YNKWQEHKA+K+VERAFSSSHDDVLM+P+  G    E  
Sbjct: 1   MNDLQTSLFVIGGVIVVGVISYNKWQEHKAKKSVERAFSSSHDDVLMAPE--GRESREE- 57

Query: 62  FTAPVAERSGAPASPAAPEMGRAEPSLYEVPERKPVSAPVKAYQEQAEFEPREPFLGEPP 121
                                R EPS+                    + E  EP   E P
Sbjct: 58  ---------------------RLEPSI--------------------DGERHEPTFSENP 76

Query: 122 LAEPARGAEAALDQALAQAQQSTVAQVIAGAEEQIETAPAFTPPPEMQARLAPKRELPVD 181
             +            +A  QQ T A     AE +++    F  P E       ++ELPVD
Sbjct: 77  YDD------------VAPVQQDTAA---PHAEAELDAPVDFVQPIE-------EKELPVD 114

Query: 182 ELIDCNIPIALDNPLRGDKLLPLLQNLRHVGNKPVHFIGRTLEGDWEAIAHGSIYDALLA 241
            LIDC IP+AL   LRG+K+LP LQ+LRHVG+KPVHF G+ ++G WEAI HG IY +L+A
Sbjct: 115 YLIDCTIPLALTTQLRGEKILPALQSLRHVGSKPVHFAGQHIDGGWEAITHGGIYKSLMA 174

Query: 242 GAQLANRSNAINEIEYSELVMRLRDLTDSLAGEPELPDMPDVIRTAQALHQFIIDHDAQL 301
           G QLANRSNA+NE+EYSE VMRLR + D    +P++PDM +V+ TA++LH F+ ++DA+L
Sbjct: 175 GVQLANRSNALNELEYSEFVMRLRQIADDFDADPDVPDMAEVMVTARSLHHFVTEYDAKL 234

Query: 302 SVNVRSQGAPWSLATLLAALTRQGFDRRTEGYLVMQDGEGEVLFALSTNATPTDETTDRL 361
           SVNV + GAPWS+ TLLAAL RQGFD R EG LVM DG+G VLF+LSTN T  +ETT RL
Sbjct: 235 SVNVHTNGAPWSVTTLLAALERQGFDVRPEGRLVMPDGDGGVLFSLSTNVTLAEETTSRL 294

Query: 362 TLLLDVPRVAPSRDGYGALVACAKSLSARLGGIIVDDSDQPLTDEALSDIAEQVAAFYSA 421
           TLLLDVP V+P+RDG+GA+ ACA+SL+ARL G +VDD +QPL+D +L++I+ Q+  FY+ 
Sbjct: 295 TLLLDVPVVSPARDGFGAMTACARSLAARLDGTVVDDGNQPLSDASLNEISGQLEVFYAD 354

Query: 422 MESAEIPAGSTRALRLFS 439
           ME+A+IPAGSTRALRLF+
Sbjct: 355 MEAADIPAGSTRALRLFN 372


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 999,527
Number of extensions: 42353
Number of successful extensions: 197
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 2
Length of query: 439
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 353
Effective length of database: 903,079
Effective search space: 318786887
Effective search space used: 318786887
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)