BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2017.p (584 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 352 3e-98 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 342 5e-95 gi|152981448|ref|YP_001354516.1| methyl-accepting chemotaxis pro... 339 4e-94 gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (... 338 6e-94 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 333 2e-92 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 352 bits (904), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 221/411 (53%), Positives = 276/411 (67%), Gaps = 28/411 (6%) Query: 176 LSDVQAQFRADVSRLLGILLVVGVVVSLMMLAIIRRITGSLGGEPAYAVDIATRIANGDL 235 LSDV+A + L ++L G+ + R+T + AVD A R+A GDL Sbjct: 182 LSDVEAASTRQLMLLSAMVLAFGIFCAW-------RLTIGITRPLKTAVDAARRVAGGDL 234 Query: 236 TVQVQTRAGD-TRSLLYEMATMRERLAGVIKGIRQGTEAIDIGAHEIAAGNLDLSSRTEE 294 T ++ + D LL + M + L ++ +R GTE I ++EIAAGNLDLSSRTE+ Sbjct: 235 TNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTEQ 294 Query: 295 QAGSLAMTASNMDSLTATVKQNADNARQAGQLANSASEIARRGGDVVGQVVQTMEGITES 354 QA SL TAS+M+ LT+TVKQNADNARQA QLA SASE+A +GGDVV QVVQTM I ES Sbjct: 295 QASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSINES 354 Query: 355 SRKISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEI 414 SRKI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AAKEI Sbjct: 355 SRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEI 414 Query: 415 KVLIEDSVQRVGSGSDQVARAGETMGEVVSAVQRLTDIVSEISAASEEQRRGIEQVNLAV 474 K LI DSV +V +G+ VA AG TM E+V++++R+TDI+ EI+AAS+EQ GIEQ+N A+ Sbjct: 415 KALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQAI 474 Query: 475 GEMDQVTQQNAALVEEAAAAAGSLEEQARRLKAAVATFQVEGEEVIAPQTASATVKAASV 534 G+MD VTQQNA+LVEEAAAAA S+++QAR+L V F+++ + P AS + A Sbjct: 475 GQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKLDNAQEANPPRASGVTRLAP- 533 Query: 535 AAKPTLKPAAKPMVKPVAPLPPPSKAVALAKPASAGRSSPANTDGD-WETF 584 KPAA S +A+A P R++ A GD WE F Sbjct: 534 ------KPAAG------------SAGLAVAAPLPQRRANGALPAGDEWEQF 566 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 342 bits (876), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 220/403 (54%), Positives = 277/403 (68%), Gaps = 23/403 (5%) Query: 185 ADVSRLLGILLVVGVVVSLMM-LAIIRRITGSLGGEPAYAVDIATRIANGDLT-VQVQTR 242 A+ +L+GIL V+ V++S + R IT L + AV +A ++A+GDLT V T Sbjct: 184 ANAQQLVGILSVIAVIISAFLGFLATRSITRPL----SQAVGLARKVADGDLTGTIVVTS 239 Query: 243 AGDTRSLLYEMATMRERLAGVIKGIRQGTEAIDIGAHEIAAGNLDLSSRTEEQAGSLAMT 302 +T LL + M L ++ +R GT+ I + +IA GNLDLSSRTEEQA SL T Sbjct: 240 KDETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLEET 299 Query: 303 ASNMDSLTATVKQNADNARQAGQLANSASEIARRGGDVVGQVVQTMEGITESSRKISDII 362 AS+M+ LT+TVKQNADNARQ+ QLA +ASE+A RGG VV QVV+TM I +S+ KI DII Sbjct: 300 ASSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVDII 359 Query: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKVLIEDSV 422 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEIK LI+DSV Sbjct: 360 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDDSV 419 Query: 423 QRVGSGSDQVARAGETMGEVVSAVQRLTDIVSEISAASEEQRRGIEQVNLAVGEMDQVTQ 482 ++V +GS V AG TM EVV +V+R+TDI+ EI+AAS+EQ GIEQ+N AV +MDQVTQ Sbjct: 420 EKVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQVTQ 479 Query: 483 QNAALVEEAAAAAGSLEEQARRLKAAVATFQVEGEEVIAPQTASATVKAASVAAKPTLKP 542 QNAALVEEAAAAA SL++QA L V+ F+++ V T + VAA P Sbjct: 480 QNAALVEEAAAAAESLQDQANNLSQVVSVFKLDANAVALQAT-------SRVAA-----P 527 Query: 543 AAKPMVKPVAPLPPPSKAVALAKPASAGRSSPANTDGD-WETF 584 A++P+ KP + ++ + K R+S DGD WE F Sbjct: 528 ASRPVSKPAQQI----RSANVDKQIVRQRASATAGDGDEWEQF 566 >gi|152981448|ref|YP_001354516.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 339 bits (869), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 220/402 (54%), Positives = 275/402 (68%), Gaps = 28/402 (6%) Query: 190 LLGILLVVGVVVSLMMLAI-----IRRITGSLGGEPAYAVDIATRIANGDLTVQVQTRA- 243 L I + GV+ L+++AI IR I LG ++ + I+ GDLT +++ ++ Sbjct: 187 LFRIAAIGGVLFGLLVVAIAAFFLIRAIMQPLG----EMLNHFSAISAGDLTSRIEVKSR 242 Query: 244 GDTRSLLYEMATMRERLAGVIKGIRQGTEAIDIGAHEIAAGNLDLSSRTEEQAGSLAMTA 303 + L+ + M++ L + +RQG+ AI + +IAAGNLDLSSRTE+QA SL TA Sbjct: 243 NEMGKLMGGLQVMQKSLIETVFNVRQGSTAIGVATQQIAAGNLDLSSRTEQQASSLEETA 302 Query: 304 SNMDSLTATVKQNADNARQAGQLANSASEIARRGGDVVGQVVQTMEGITESSRKISDIIG 363 S+M+ LT+TVKQNADNARQA QLA SAS +A +GG VV QVV TME I S++KI DIIG Sbjct: 303 SSMEELTSTVKQNADNARQANQLAASASTVAEKGGVVVSQVVDTMEEINTSAKKIVDIIG 362 Query: 364 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKVLIEDSVQ 423 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEIK LI DSV Sbjct: 363 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLIGDSVD 422 Query: 424 RVGSGSDQVARAGETMGEVVSAVQRLTDIVSEISAASEEQRRGIEQVNLAVGEMDQVTQQ 483 +V GS VA AG TM EVV VQ++TDI+SEI+AAS+EQ GIEQVN A+ +MDQVTQQ Sbjct: 423 KVEIGSKLVAEAGVTMKEVVHGVQQVTDIMSEITAASQEQSAGIEQVNQAISQMDQVTQQ 482 Query: 484 NAALVEEAAAAAGSLEEQARRLKAAVATFQVEGEEVIAPQTASATVKAASVAAKPTLKPA 543 NAALVEEAAAAA SL EQA +L AV+ F+++G AP +A+ K A+VA+ P Sbjct: 483 NAALVEEAAAAAESLNEQAGKLAEAVSVFKLDGVAAAAPVKKTAS-KIAAVASSP----- 536 Query: 544 AKPMVKPVAPLPPPSKAVALAKPASAGRSSPANTDG-DWETF 584 P +A+A P ++ A T+G DWE F Sbjct: 537 -----------APVKRAIAAPAPVRQKVANGAATNGDDWEEF 567 >gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] Length = 560 Score = 338 bits (866), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 210/369 (56%), Positives = 264/369 (71%), Gaps = 18/369 (4%) Query: 187 VSRLLGILLVVGVVVSLMMLAIIRRITGSLGGEPAYAVDIATRIANGDLTVQVQTRAGD- 245 V+ LL I L G+V+S R IT L AV +A +A+GDLT Q+ ++ D Sbjct: 194 VALLLSIGL--GIVIS-------RSITRPLN----EAVLVAQTVASGDLTSQINVKSKDE 240 Query: 246 TRSLLYEMATMRERLAGVIKGIRQGTEAIDIGAHEIAAGNLDLSSRTEEQAGSLAMTASN 305 T LL + M + L G++ +R GT + +++IA+GN+DLSSRTEEQA SL TAS+ Sbjct: 241 TGQLLQALKDMNQSLIGIVDEVRSGTATMATASNQIASGNMDLSSRTEEQASSLEETASS 300 Query: 306 MDSLTATVKQNADNARQAGQLANSASEIARRGGDVVGQVVQTMEGITESSRKISDIIGVI 365 M+ LT+TVKQNADNARQA L+ SASEIA +GG VV +VV TM GI +S++KI+DIIGVI Sbjct: 301 MEELTSTVKQNADNARQANSLSLSASEIAVKGGQVVSEVVVTMNGINDSAKKITDIIGVI 360 Query: 366 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKVLIEDSVQRV 425 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEIK LI+DSV RV Sbjct: 361 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKALIDDSVGRV 420 Query: 426 GSGSDQVARAGETMGEVVSAVQRLTDIVSEISAASEEQRRGIEQVNLAVGEMDQVTQQNA 485 +GS V +AG TM EVV +V+R+TDI++EI AAS+EQ GIEQVN A+ +MD VTQQNA Sbjct: 421 DTGSKLVVQAGSTMTEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIAQMDHVTQQNA 480 Query: 486 ALVEEAAAAAGSLEEQARRLKAAVATFQVEGEEVIAP-QTASATVKAASVAAKPTLKPAA 544 ALVEEAAAAAGSL++QA +L+ V+ F+++ AP QT S +P L Sbjct: 481 ALVEEAAAAAGSLKDQAVKLEQTVSVFKIDAS---APQQTEHQDTSVRSTPVRPALASKL 537 Query: 545 KPMVKPVAP 553 + + V+P Sbjct: 538 SSIKRAVSP 546 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 333 bits (853), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 218/407 (53%), Positives = 274/407 (67%), Gaps = 25/407 (6%) Query: 184 RADVSRLLG----ILLVVGVVVSLMMLAIIRRITGSLGGEPAYAVDIATRIANGDLTVQV 239 +ADV L IL+ +G + ++ + ++ S+ YAV +A +A+GDL ++ Sbjct: 180 KADVDALYASGRTILITLGSIALILSAFLAWLLSRSITRPLDYAVSVARTVASGDLRNKI 239 Query: 240 QTRAGD-TRSLLYEMATMRERLAGVIKGIRQGTEAIDIGAHEIAAGNLDLSSRTEEQAGS 298 Q+ + D T LL + M + L + +R G E I +++IAAGNLDLSSRTEEQA S Sbjct: 240 QSSSNDETGQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIAAGNLDLSSRTEEQASS 299 Query: 299 LAMTASNMDSLTATVKQNADNARQAGQLANSASEIARRGGDVVGQVVQTMEGITESSRKI 358 L TAS+M+ LT+TVKQNADNARQA QLA SAS +A +GG+VV +VV TME I S++KI Sbjct: 300 LEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGEVVSRVVDTMEQINASAKKI 359 Query: 359 SDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAQAAKEIKVLI 418 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEIK LI Sbjct: 360 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLI 419 Query: 419 EDSVQRVGSGSDQVARAGETMGEVVSAVQRLTDIVSEISAASEEQRRGIEQVNLAVGEMD 478 DSV +V GS V AG TM EVV +V+ +TDI+SEI AAS+EQ GIEQVN A+G+MD Sbjct: 420 GDSVDKVELGSKLVGEAGVTMDEVVQSVKHVTDIMSEIMAASQEQSAGIEQVNQAIGQMD 479 Query: 479 QVTQQNAALVEEAAAAAGSLEEQARRLKAAVATFQVEGEEVIAPQTASATVKAASVAAKP 538 QVTQQNAALVEEAAAAA SL EQA +L AV+ F+++ + + AA P Sbjct: 480 QVTQQNAALVEEAAAAAESLNEQAAKLAEAVSVFKLD---------------SITAAAAP 524 Query: 539 TLKPAAKPMVKPVAPLPPPSKAVALAKPASAGRSSPANTDG-DWETF 584 + K V P ++A+A+ P + S+ A T G DWE F Sbjct: 525 SKKVNVGTRVASHG--APANRAIAV--PVTKKISNGAATGGDDWEEF 567 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.314 0.127 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 923,752 Number of extensions: 30268 Number of successful extensions: 217 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 145 Number of HSP's successfully gapped: 21 Length of query: 584 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 496 Effective length of database: 895,685 Effective search space: 444259760 Effective search space used: 444259760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)