BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2013.p
         (377 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980053|ref|YP_001353762.1| succinyl-diaminopimelate desucc...   674   0.0  
gi|152981445|ref|YP_001351721.1| hypothetical protein mma_0031 [...    61   1e-10

>gi|152980053|ref|YP_001353762.1| succinyl-diaminopimelate
           desuccinylase [Janthinobacterium sp. Marseille]
          Length = 375

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/374 (85%), Positives = 346/374 (92%)

Query: 3   MSKTLALTQELMSLSSVTPEDKGCQARLAELLTPLGFVCETIQSGEVTNLWARKGTAQPL 62
           MSKTLALT+EL++LSSVTPEDKGCQ+RL ELL PLGFVCETI+S  VTNLWARKGT QPL
Sbjct: 1   MSKTLALTEELIALSSVTPEDKGCQSRLIELLEPLGFVCETIESDGVTNLWARKGTTQPL 60

Query: 63  VVFAGHTDVVPTGPLEKWQSHPFQPTLRDGRLYGRGASDMKTSIAAMVVACEEFTAAHPE 122
           +VFAGHTDVVPTGPLE+W S PF PT R+G+LYGRGA+DMKTSIAAMVVA EEF  AHP 
Sbjct: 61  LVFAGHTDVVPTGPLEQWTSPPFVPTQREGKLYGRGAADMKTSIAAMVVAAEEFVQAHPA 120

Query: 123 HKGSIGFLITSDEEGPATDGTVVVCNALKARGEQLDYCIVGEPTSAKTLGDMIKNGRRGT 182
           HKGSIGFLITSDEEGPATDGTV+VCNALKARGEQLDYC+VGEPTS+  LGD IKNGRRG+
Sbjct: 121 HKGSIGFLITSDEEGPATDGTVIVCNALKARGEQLDYCVVGEPTSSDVLGDTIKNGRRGS 180

Query: 183 MSGKLTVKGIQGHIAYPQLARNPIHQAAPALAELVAEQWDAGNEYYLPTSWQISNIHGGT 242
           MSGKLTVKGIQGHIAYPQLARNPIHQ APALAELVAE+WD GNEYYLPTSWQ+SNIHGG 
Sbjct: 181 MSGKLTVKGIQGHIAYPQLARNPIHQCAPALAELVAEKWDDGNEYYLPTSWQVSNIHGGA 240

Query: 243 GASNVIPGEVVIDFNFRFSTASTVEGLQQRVHAILDKHGLEYDLKWTVGGLPFLTPRGDL 302
           GASNVIPG VVIDFNFRF TASTV+GLQ+RVHAILDKHGLEYDLKW++ G PFLTP+G L
Sbjct: 241 GASNVIPGNVVIDFNFRFCTASTVDGLQKRVHAILDKHGLEYDLKWSISGHPFLTPKGTL 300

Query: 303 SDALSKAIKDETGLETELSTTGGTSDGRFIAQICPQVIEFGPPNDSIHKINEHIEVRYID 362
           SDA+S AIK ETG+ TELSTTGGTSDGRFIAQICPQV+EFGPPN SIHKI+EHIEVR+ID
Sbjct: 301 SDAMSDAIKSETGVTTELSTTGGTSDGRFIAQICPQVVEFGPPNGSIHKIDEHIEVRFID 360

Query: 363 PLKNIYRKTLENLL 376
           PLKNIYR+T+ENLL
Sbjct: 361 PLKNIYRRTMENLL 374


>gi|152981445|ref|YP_001351721.1| hypothetical protein mma_0031
           [Janthinobacterium sp. Marseille]
          Length = 410

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 117/312 (37%), Gaps = 34/312 (10%)

Query: 61  PLVVFAGHTDVVPTGPLEKWQSHPFQPTLRDGRLYGRGASDMKTSIAAMVVACEEFTAAH 120
           P V    H DVVP G    W   P+  T+RDG + GRGA+  K+  A    A        
Sbjct: 89  PTVALNAHGDVVPPG--AGWSVDPYSATVRDGWMIGRGAAVSKSDFATYAFALRALKELS 146

Query: 121 PEHKGSIGFLITSDEEGPATDGTVVVCNALKARGEQLDYCIVGEPTSAKTLGDMIKNGRR 180
              +G +   +T DEE   T G       L+    + DY I             +     
Sbjct: 147 IPLRGQVELHLTYDEE---TGGLAGPGWLLQQGLSKPDYAICA------GFSYNVTTAHN 197

Query: 181 GTMSGKLTVKGIQGHIAYPQLARNPIHQAAPALAELVAEQWDAGNEYYLPT--------- 231
           G +  ++ V G   H A P       H A  A  +L++  +D  N     T         
Sbjct: 198 GCLHLEIKVHGTSAHAARPDTG----HDALEAATKLLSALYDYRNSLQQRTSAISGITSP 253

Query: 232 SWQISNIHGGTGASNVIPGEVVIDFNFRFSTASTVEGLQQRVHAILDKH-----GLEYDL 286
           S  +  I+GG   +NV+P EV +  + R       E ++  + A+++       G+  ++
Sbjct: 254 SLVVGMINGGIN-TNVVPDEVTLRLDRRIIPEEIPEEVEAELRAVIENTLRGMPGIRSEV 312

Query: 287 KWTVGGLPFLTPRGDLSDALSKAIKDETGLETELSTTGGT---SDGRFIAQICPQVIEFG 343
           K  +   PF  P GD +        + +    E  T  G    SD R  A+     + +G
Sbjct: 313 KRILLASPF-KPVGDAARLRDIVCTEASAALGEAVTPIGVPLYSDARLYAEAGVATVMYG 371

Query: 344 PPNDSIHKINEH 355
               ++ + N H
Sbjct: 372 AGPRTLLEANGH 383


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 880,060
Number of extensions: 35825
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 2
Length of query: 377
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 292
Effective length of database: 906,776
Effective search space: 264778592
Effective search space used: 264778592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)