BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2012.p
         (296 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981411|ref|YP_001353763.1| N5-glutamine S-adenosyl-L-methi...   487   e-139
gi|152980147|ref|YP_001351901.1| methylase of polypeptide chain ...    97   1e-21

>gi|152981411|ref|YP_001353763.1| N5-glutamine
           S-adenosyl-L-methionine-dependent methyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 296

 Score =  487 bits (1253), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 226/294 (76%), Positives = 263/294 (89%)

Query: 1   MTPNNFSTVRDLLRYAVTRFNTEQLFFGHGSSNALDEAAYLILHTLKLPLDQLDPFLDAR 60
           + PN  ST+RDLLRYAVTRFNT +LFFGHGS+NALDEAAYLILHTLKLPLD+LDPF DAR
Sbjct: 3   IKPNELSTIRDLLRYAVTRFNTAKLFFGHGSTNALDEAAYLILHTLKLPLDKLDPFFDAR 62

Query: 61  LLPEEIASIMRVIERRSKDRVPAAYITNEAWLGAYRFYVDERVIVPRSFIAELIPQHFSP 120
           LL EE+ +++RVIE+R+ +R+PAAYITNE WLG YRFYVDERVIVPRSFIAELIP+ FSP
Sbjct: 63  LLQEEVDAVLRVIEQRADERLPAAYITNEGWLGGYRFYVDERVIVPRSFIAELIPEQFSP 122

Query: 121 WIQDPEAIENALDLCTGSGCLPILLADAFPNAQIDAVDISADALAVARKNVDEYQLQDRI 180
           W+ +P+ + N L+LCTGSGCLPI+LADAFPNA +DAVDIS DAL VA++NV+EY+L  RI
Sbjct: 123 WVSNPDKVNNILELCTGSGCLPIMLADAFPNAHVDAVDISTDALEVAKRNVEEYELGHRI 182

Query: 181 NLVQSDLYTQLPLRKYDLIISNPPYVNSGSMAKLPQEYLREPQLALAGGEDGMDLVRKIV 240
           NL++SDLY  +P  K+DLII+NPPYVNSGSM KLP EYLREPQ+ALAGG DGMDLVRKIV
Sbjct: 183 NLIESDLYANVPEYKFDLIITNPPYVNSGSMDKLPPEYLREPQIALAGGTDGMDLVRKIV 242

Query: 241 AGAAERLTPEGVLVVEIGNERAFAEAAFPELELTWLTTSAGDDMVFLVTAEQLQ 294
           AGA +RLTP G+L+VEIGNER FAEAAFP+L LTWLTTSAGDDMVFL+TA+QLQ
Sbjct: 243 AGAGQRLTPNGLLMVEIGNEREFAEAAFPDLNLTWLTTSAGDDMVFLITADQLQ 296


>gi|152980147|ref|YP_001351901.1| methylase of polypeptide chain
           release factors [Janthinobacterium sp. Marseille]
          Length = 280

 Score = 97.1 bits (240), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 120/232 (51%), Gaps = 15/232 (6%)

Query: 37  EAAYLILHTLKLPLDQLDPFLDARLLPEEIASIMRVIERRSKDRVPAAYITNEAWLGAYR 96
           EA  L+ +  +L   QL    +  L  EE   + ++  RR     P AY+T E       
Sbjct: 27  EARILLGYVTRLSRVQLITQAERALTAEEAQQLSQLFARRLAGE-PIAYLTGEREFFGLS 85

Query: 97  FYVDERVIVPR---SFIAELIPQHFSPWIQDPEAIENALDLCTGSGCLPILLADAFPNAQ 153
           F V   V++PR     + EL   +  P           LD+ TGSG + + +A A P+A 
Sbjct: 86  FDVSPAVLIPRPDTELLVELALHYLPPQ-------GRVLDMGTGSGAIAVAIAHARPDAF 138

Query: 154 IDAVDISADALAVARKNVDEYQLQDRINLVQSDLYTQLPLRKYDLIISNPPYVNSGSMAK 213
           + A+D+SA+ALA+A  N  + Q+Q  +N ++SD ++ +  +++DLI+SNPPY+ +G    
Sbjct: 139 VTALDVSAEALAIAEGNARKNQVQ--VNFLRSDWFSAVKEQRFDLIVSNPPYIVAGD-PH 195

Query: 214 LPQEYLR-EPQLALAGGEDGMDLVRKIVAGAAERLTPEGVLVVEIGNERAFA 264
           L +  LR EP  AL    +G+  ++ I   AA  L P   L++E G ++A A
Sbjct: 196 LSEGDLRFEPVDALTDHANGLSDLQTITRDAARYLAPAAWLLMEHGYDQAAA 247


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 673,495
Number of extensions: 27646
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 2
Length of query: 296
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 213
Effective length of database: 914,170
Effective search space: 194718210
Effective search space used: 194718210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)