BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2010.p
         (267 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981681|ref|YP_001351726.1| ABC transporter substrate bindi...    78   5e-16

>gi|152981681|ref|YP_001351726.1| ABC transporter substrate binding
           protein [Janthinobacterium sp. Marseille]
          Length = 259

 Score = 78.2 bits (191), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 118/250 (47%), Gaps = 14/250 (5%)

Query: 14  GAALLASSLSVSAADLLQSVKSSGTLKVALEGNYPPFNFKDAKTGELT--GFEVDVAKLL 71
           GA LL +   V+ AD L  ++  G L+VA+  ++PPF    + T ++T  G ++DVA L+
Sbjct: 13  GALLLTN---VARADALDDIQKKGVLRVAVPQDFPPFG---SVTTDMTPQGLDIDVATLI 66

Query: 72  AAKLGVKPVFTTTEWSGILAGLGAGKYDVIINQVGITDERQKAFDFSDPYTLSSAQLIVR 131
           A KLGVK        +  +  L   K D++I+ +G   ER+K  DFS  Y      +   
Sbjct: 67  AKKLGVKVELIPVTSANRIPYLQTKKVDLVISSMGKNPEREKVIDFSAAYAPFFNGVFGP 126

Query: 132 KDEKRDFKSLDDLKGKKLGLGQGT--NFEQKAKAVPGIDVRTYPGSPEYLADLAAGRIDA 189
            D+K    +  DL GK +G+ +G+  + E    A     ++ Y  +   ++   + ++  
Sbjct: 127 ADQK--VAAPADLAGKTIGVTRGSVEDLELSKIAPESATIKRYEDNNGTISSFLSNQVQL 184

Query: 190 ALNDSLLVGYILKSTNLPLKAGSPIGTVDK-IGIPFRKGNPEFKAALNKALAEIKADGSF 248
               +++   I+ + N P K  +     +    I   KG  +    +N  +A+ K DGS 
Sbjct: 185 VATGNVIAAAII-AKNPPKKPETKFLIKNSPCSIGLNKGEEKLLEKVNAIIAQAKKDGSL 243

Query: 249 KAASEKWFGI 258
              +EKW G+
Sbjct: 244 NTLTEKWLGL 253


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 543,437
Number of extensions: 21064
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 267
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 185
Effective length of database: 917,867
Effective search space: 169805395
Effective search space used: 169805395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)