BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2009.p (221 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport s... 120 6e-29 gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate tr... 116 1e-27 gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type tr... 110 7e-26 gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport s... 79 2e-16 >gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 218 Score = 120 bits (301), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 62/164 (37%), Positives = 95/164 (57%) Query: 56 AAVYVSMMRGTPLLVQIFVVYYGLPGLGIEFSPLTAGVLTLSLNAGAYLSESLRGAILGV 115 A +Y+ + +GTPLL+Q+F+V++G+ GIE A LTL+L + ++L+E RG + + Sbjct: 53 ARIYIEIFQGTPLLMQLFLVFFGIALFGIEVPAWLAAGLTLTLWSASFLAEIWRGCVEAI 112 Query: 116 TRGQWNASYSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLA 175 RGQW AS + + Y Q +RY+I+PQA+RIA+P + +IK T++ S+I EL A Sbjct: 113 PRGQWEASSVLAMNYVQQMRYVILPQALRIALPPTIGFSVQIIKGTAVTSIIGFVELSKA 172 Query: 176 TKEVIAVTFRPLPLYVAAAAIYWALSLCFEALQHRLEKKLGKAH 219 + TF P +Y AA Y+ L LE+K AH Sbjct: 173 ATVITNATFMPFTVYAAAGLFYFILCWPLSRYSQFLERKFHAAH 216 >gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate transport system permease protein [Janthinobacterium sp. Marseille] Length = 228 Score = 116 bits (291), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 122/221 (55%), Gaps = 11/221 (4%) Query: 6 LELLQQAAPTLAKGVGYTLLFALASMVGGLVLGFVLAVARIVPWRPIHWPAAVYVSMMRG 65 E++ + P L G+ YTL + + GG++ G +LA+AR+ + + AA YV++MR Sbjct: 6 FEIITRTWPYLLAGLQYTLQLTVVAAFGGVIFGTLLAMARLSSNKTLSLIAAAYVNLMRS 65 Query: 66 TPLLVQIFVVYYGLPGL-----GIEFSPLTAGV-----LTLSLNAGAYLSESLRGAILGV 115 PLL+ IF Y+ +P + G E P+ G +T + AY E +R I + Sbjct: 66 IPLLLVIFWFYFLMPIVLQTITGSE-RPVQLGADRSAYITFIMFEAAYFCEIMRAGIQSI 124 Query: 116 TRGQWNASYSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLA 175 ++GQ NA Y++GLTY Q+++ +++PQA R +P + I L +D SLVS++ VT+ + A Sbjct: 125 SKGQVNAGYALGLTYRQSMQLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFVGA 184 Query: 176 TKEVIAVTFRPLPLYVAAAAIYWALSLCFEALQHRLEKKLG 216 +V R + +Y+ A +Y+ LS L +L+K+ Sbjct: 185 AVKVAQRDSRVVEMYLFVAIVYFVLSFALSTLVKQLQKRFA 225 >gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type transport system permease protein [Janthinobacterium sp. Marseille] Length = 243 Score = 110 bits (275), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 71/212 (33%), Positives = 114/212 (53%), Gaps = 11/212 (5%) Query: 15 TLAKGVGYTLLFALASMVGGLVLGFVLAVARIVPWRPIHWPAAVYVSMMRGTPLLVQIFV 74 +L G+G+TL AL + + V+G ++ V R R + YV + R PLLVQ FV Sbjct: 20 SLLSGLGWTLAVALFAWIFAFVVGSIVGVGRTSEKRWLVRLGGAYVELFRNIPLLVQFFV 79 Query: 75 VYYGLPGLG-------IEFSP----LTAGVLTLSLNAGAYLSESLRGAILGVTRGQWNAS 123 Y+ +PGL I P V+ L + ++E +R I + RGQ NA Sbjct: 80 WYFVVPGLVPAVKAWVITLDPTEHQFVTAVVCLGFFTSSRIAEQVRSGIQALPRGQRNAG 139 Query: 124 YSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVT 183 Y++GLT QT RY+++P A RI +P +++ L++LIK+T++ I + EL T+E+ +T Sbjct: 140 YALGLTTAQTYRYVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGLVELFFRTREMGEMT 199 Query: 184 FRPLPLYVAAAAIYWALSLCFEALQHRLEKKL 215 FR + AA IY +++ L +E++L Sbjct: 200 FRYFEAFGAATLIYVVIAMTANRLMALVERRL 231 >gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 223 Score = 79.0 bits (193), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 86/144 (59%), Gaps = 3/144 (2%) Query: 50 RPIHWPAAVYVSMMRGTPLLVQIFVVYYGLPGLGIEFSPLTAGVLTLSLNAGAYLSESLR 109 RP+ + YV ++R TP L+Q+F +++GLP +G++ + + A +L + +N GAY +E +R Sbjct: 54 RPV---VSAYVELIRNTPFLIQLFFIFFGLPSIGVQITEMQAAILAMVINLGAYSTEIIR 110 Query: 110 GAILGVTRGQWNASYSVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITV 169 ++ V RGQ A+ S+ +T Q R+II+ A++ P++S+ ++ ++ +++ S I V Sbjct: 111 AGVVAVARGQIEAALSLSMTRVQIFRHIILRPALQKIWPALSSQIVIVMLGSAVCSQIAV 170 Query: 170 TELMLATKEVIAVTFRPLPLYVAA 193 EL A + FR Y+ A Sbjct: 171 EELSFAANFIQGRNFRAFEAYLIA 194 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.326 0.138 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 453,746 Number of extensions: 17207 Number of successful extensions: 85 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 83 Number of HSP's successfully gapped: 4 Length of query: 221 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 141 Effective length of database: 925,261 Effective search space: 130461801 Effective search space used: 130461801 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 128 (53.9 bits)