BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2007.p (253 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981180|ref|YP_001353103.1| osmolarity response regulator [... 414 e-117 gi|152981322|ref|YP_001355016.1| two components system response ... 191 3e-50 gi|152981303|ref|YP_001354918.1| transcriptional regulatory prot... 180 6e-47 gi|152981318|ref|YP_001352484.1| response regulator of copper se... 146 1e-36 gi|152980825|ref|YP_001354044.1| heavy metal response regulator ... 141 3e-35 >gi|152981180|ref|YP_001353103.1| osmolarity response regulator [Janthinobacterium sp. Marseille] Length = 248 Score = 414 bits (1064), Expect = e-117, Method: Compositional matrix adjust. Identities = 215/247 (87%), Positives = 237/247 (95%) Query: 7 NNTNTTTSANQFKVLVVDDDIRLRDLLRRYLTEQGFNVVTAENAQAMNKLWIRERYDLLV 66 +T +T+++Q KVLVVDDD+RLRDLLRRYL+EQGFNVVTAENAQAMNKLW+RERYDLLV Sbjct: 2 KDTAHSTNSHQTKVLVVDDDLRLRDLLRRYLSEQGFNVVTAENAQAMNKLWLRERYDLLV 61 Query: 67 LDLMLPGEDGLAICRRLRGAGDQTPIIMLTAKGEDVDRIIGLEMGADDYLPKPFNPRELV 126 LDLMLPGEDGL+ICRRLRGAGD+TPIIMLTAKGEDVDRI+GLEMGADDYL KPFNPRELV Sbjct: 62 LDLMLPGEDGLSICRRLRGAGDKTPIIMLTAKGEDVDRIVGLEMGADDYLAKPFNPRELV 121 Query: 127 ARINAVLRRKGPDELPGAPSETPETFEFGDFILDLGTRTLKKNGETISLTTGEFSVLKVF 186 ARI+AVLRR GP+E+PGAPSETP++F FG+F+LDLGTRTLKKN ET+ LTTGEFSVLKVF Sbjct: 122 ARISAVLRRVGPEEIPGAPSETPQSFTFGEFVLDLGTRTLKKNDETVPLTTGEFSVLKVF 181 Query: 187 ARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWGLGYVF 246 AR+ARQPLSREKLME+ARGREYEVFDRSLDVQISRLRKLIEPDP+ PLYIQTVWGLGYVF Sbjct: 182 ARHARQPLSREKLMELARGREYEVFDRSLDVQISRLRKLIEPDPSTPLYIQTVWGLGYVF 241 Query: 247 IPEGKPR 253 IPEGKPR Sbjct: 242 IPEGKPR 248 >gi|152981322|ref|YP_001355016.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 246 Score = 191 bits (485), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 106/233 (45%), Positives = 148/233 (63%), Gaps = 2/233 (0%) Query: 16 NQFKVLVVDDDIRLRDLLRRYLTEQGFNVVTAENAQAMNKLWIRERYDLLVLDLMLPGED 75 N +L+VDDD +R+LL YL + G A N + M + + DL+VLDLMLPGED Sbjct: 3 NNDHILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGED 62 Query: 76 GLAICRRLRGAGDQT-PIIMLTAKGEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLR 134 GL +CR LR +T P++MLTA+ E+ DRIIGLEMGADDYL KPF REL ARI +VLR Sbjct: 63 GLTLCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLR 122 Query: 135 RKGPDELPGAPSETPETFEFGDFILDLGTRT-LKKNGETISLTTGEFSVLKVFARNARQP 193 R SE + FGD+ LD R L G ++L+ E+ +L+VF + ++ Sbjct: 123 RARMLPANLQVSEPAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQRV 182 Query: 194 LSREKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWGLGYVF 246 L+R++L+ + +GR+ + FDRS+D+ ISRLR+ ++ D P YI+T+ GYVF Sbjct: 183 LTRDQLLNLTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVF 235 >gi|152981303|ref|YP_001354918.1| transcriptional regulatory protein OmpR [Janthinobacterium sp. Marseille] Length = 233 Score = 180 bits (457), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 99/232 (42%), Positives = 143/232 (61%), Gaps = 12/232 (5%) Query: 22 VVDDDIRLRDLLRRYLTEQGFNVV----TAENAQAMNKLWIRERYDLLVLDLMLPGEDGL 77 +++DD RL ++ YL + GF V +E Q + + + + +++LDLMLP DGL Sbjct: 1 MIEDDQRLASMVATYLNQNGFEVTHSGTASEGLQQLQQAAATQAFAIVLLDLMLPDADGL 60 Query: 78 AICRRLRGAGD---QTPIIMLTAKGEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLR 134 +CR++RG PI+MLTAKG+ +DR++GLE+GADDY+PKPF PREL+AR+ AVLR Sbjct: 61 DVCRQIRGQTQPLASMPIVMLTAKGDPMDRVVGLELGADDYIPKPFEPRELLARLRAVLR 120 Query: 135 RKGPDELPGAPSETPETFEFGDFILDLGTRTLKKNGETISLTTGEFSVLKVFARNARQPL 194 R+ G + FG +DL R ++ + + +T+ +F++L A A + L Sbjct: 121 RQ-----QGVATNNERVLRFGRLEIDLDARVIRLDDQEKPVTSYQFNLLAAMADRAGRVL 175 Query: 195 SREKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWGLGYVF 246 SRE+LM++ +G E FDRS+DV I RLR IE DP P I TV G GYVF Sbjct: 176 SREQLMDVVKGEPLEAFDRSIDVHIGRLRAAIEDDPKQPKRIITVRGAGYVF 227 >gi|152981318|ref|YP_001352484.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] Length = 227 Score = 146 bits (368), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 88/233 (37%), Positives = 132/233 (56%), Gaps = 9/233 (3%) Query: 18 FKVLVVDDDIRLRDLLRRYLTEQGFNVVTAENAQAMNKLWIRERYDLLVLDLMLPGEDGL 77 K+LVV+D+ + D +R+ L E GF V A N + + + E YDL++LD+MLP DG Sbjct: 1 MKILVVEDENKTADYIRQGLREAGFVVDVARNGLDGHHMAMNEAYDLVLLDVMLPDVDGW 60 Query: 78 AICRRLRGAGDQTPIIMLTAKGEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLRRKG 137 I + LR AG Q P++ LTA+G DR+ GLE+GAD YL KPF EL+A + +LRR+ Sbjct: 61 HIVKSLRDAGHQVPVLFLTARGSVDDRVKGLELGADSYLIKPFAFSELLAHVRTLLRRR- 119 Query: 138 PDELPGAPSETPETFEFGDFILDLGTRTLKKNGETISLTTGEFSVLKVFARNARQPLSRE 197 P+++ + + D +LDL R + G+ I LT EF++L++ AR + L R Sbjct: 120 -----NVPAQS-DQLQIADLVLDLTRRKATRMGQRIVLTNKEFALLELLARRRGEVLPRS 173 Query: 198 KLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWGLGYVF-IPE 249 + ++ +DV I RLR ++ +P P I TV G+GY IP+ Sbjct: 174 LIASQIWDMNFDSNTNVIDVAIRRLRAKMD-EPYEPKLIHTVRGMGYTLDIPD 225 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 141 bits (356), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 90/230 (39%), Positives = 131/230 (56%), Gaps = 12/230 (5%) Query: 18 FKVLVVDDDIRLRDLLRRYLTEQGFNVVTAENAQAMNKLWIRERYDLLVLDLMLPGEDGL 77 K+L+V+D+++ + LR+ L E GF V A + +L ++E Y+L++LD+MLP DG Sbjct: 1 MKILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPLLDGW 60 Query: 78 AICRRLRGAGDQTPIIMLTAKGEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLRRKG 137 + R LR D TP++ LTA+ E DR+ GLE+GADDYL KPF+ EL+AR+ +LRR Sbjct: 61 QLLRELRKVRD-TPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRR-- 117 Query: 138 PDELPGAPSETPETFEFGDFILDLGTRTLKKNGETISLTTGEFSVLKVFARNARQPLSRE 197 P E D +D+ R + +NGE + LT EFS+L + A+ + LSR Sbjct: 118 ------GPVRESSLIEIADMQIDVMKRRVTRNGERLDLTAKEFSLLHLLAQRRGEVLSRS 171 Query: 198 KLMEMARGREYEVFDRSLDVQISRLR-KLIEPDPANPLYIQTVWGLGYVF 246 + ++ +DV I RLR KL +P P IQTV G+GYV Sbjct: 172 LIASQVWDMNFDSDTNVVDVAIRRLRAKLDDPHPRK--LIQTVRGIGYVL 219 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.139 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 555,440 Number of extensions: 23788 Number of successful extensions: 167 Number of sequences better than 1.0e-08: 33 Number of HSP's gapped: 136 Number of HSP's successfully gapped: 33 Length of query: 253 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 172 Effective length of database: 921,564 Effective search space: 158509008 Effective search space used: 158509008 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)