BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2006.p (453 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982747|ref|YP_001353102.1| two-component sensor kinase Env... 583 e-168 gi|152982389|ref|YP_001355015.1| two-component sensor histidine ... 125 6e-30 gi|152982315|ref|YP_001354919.1| two component sensor histidine ... 119 4e-28 gi|152981014|ref|YP_001353510.1| two-component regulatory protei... 84 2e-17 gi|152982293|ref|YP_001351978.1| two-component sensor histidine ... 75 1e-14 >gi|152982747|ref|YP_001353102.1| two-component sensor kinase EnvZ [Janthinobacterium sp. Marseille] Length = 455 Score = 583 bits (1503), Expect = e-168, Method: Compositional matrix adjust. Identities = 278/445 (62%), Positives = 355/445 (79%), Gaps = 3/445 (0%) Query: 9 WFSNGLFWRTFFLLTFLITASMVAWVASFRMVERGPRAEQLAAQIVSVVTITRAALTHSA 68 W +GLFWRTFFLL FLI ASM AWVAS+R+VE+ PRA Q+AAQ++SVVTITRAALTHSA Sbjct: 10 WIKSGLFWRTFFLLAFLIAASMAAWVASYRIVEQTPRANQIAAQVISVVTITRAALTHSA 69 Query: 69 PEMRRELLFDLASNEGIRIYPLEKTDRIVPPEDSPIVPELEYYVRQSLDENTIFASSVNE 128 P++RRELLFDLASNEGIR+YPLE+ DRI PP + ++ ++ +VR L ++T FA +VN+ Sbjct: 70 PDLRRELLFDLASNEGIRVYPLEENDRIEPPIQNGMMQTIQEHVRSGLGQDTRFARAVND 129 Query: 129 VEGFWISFNIDDDQYWLMLDRGRLDRTSSLQWLGWGSIALFLSLIGAVFISTLINQPLAR 188 V GFW+SF I DD+YWLMLDR R++ +S +QWLGWG++ + LSL+GA+ IS LINQPLAR Sbjct: 130 VAGFWVSFTISDDEYWLMLDRDRIEGSSGVQWLGWGAVTVLLSLLGALMISGLINQPLAR 189 Query: 189 LTAAARAIAKGRQPEPLPESGPTEIEEANRSFNQMVADLNRIESDRALILAGISHDLRTP 248 LTAA RAIA G++P PLPE GPTEI EAN SFNQMV DLNR+ESDRA++LAGISHDLRTP Sbjct: 190 LTAATRAIATGQRPAPLPERGPTEIREANHSFNQMVDDLNRVESDRAVVLAGISHDLRTP 249 Query: 249 LARMQLEVEMANLSDESRDGMHSDLAQMDSIIGQFLDYAKPFDTNNLETIDLAGLLEDVA 308 LARMQLEVE+A L ++R GM SDL QMD+IIGQFLDYAKP D+++ + ID+ L+ A Sbjct: 250 LARMQLEVELAGLPADARAGMQSDLEQMDAIIGQFLDYAKPSDSSHFQPIDMTALMHSAA 309 Query: 309 AKSSRLADVKITTQITPATEVAGNGTELARVFSNLVENARRYGKTADSDCAEIHIRSRIE 368 ++ R+ DV+I ++I V GN ++ RV +NL+ENARRYGK +D EI +R + E Sbjct: 310 QEALRMQDVRINSKIDDKLVVLGNAIDIKRVVNNLIENARRYGKLPGNDYVEIDLRCQAE 369 Query: 369 GQQVVVEVFDHGSGVPENECERLLRPFTRLDTARGQANGSGLGLAIVNRIVLKHNGKLVL 428 G +V++EV DHG+GVPE E +RLLRPFTR+D+ARGQANG+GLGLAIV+RIV +H+GKL L Sbjct: 370 GDKVIIEVTDHGAGVPEAEIDRLLRPFTRMDSARGQANGAGLGLAIVDRIVKRHSGKLQL 429 Query: 429 KGHEEHYGGLLVQISLPLKGHRRHA 453 E GGL++ I+L + +R+A Sbjct: 430 LNREG--GGLVIHITLN-QAKKRYA 451 >gi|152982389|ref|YP_001355015.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 434 Score = 125 bits (314), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 84/267 (31%), Positives = 140/267 (52%), Gaps = 13/267 (4%) Query: 181 LINQPLARLTAAARAIAKGRQPEPLPESGPTEIEEANRSFNQMVADLNRIESDRALILAG 240 L +PLA+L AA + + LPE GP E+ A ++FN M +N ++R ILA Sbjct: 178 LATRPLAQLADAADTLGPDLRASRLPEDGPLEVARAAKAFNAMQGRINTYMTERMQILAA 237 Query: 241 ISHDLRTPLARMQLEVEMANLSDESRDGMHSDLAQMDSIIGQFLDYAKPFD--TNNLETI 298 ISHDL+TP+ RM++ +M + S E R+ ++ DL +M+ ++ + + YA+ + I Sbjct: 238 ISHDLQTPITRMRMRADMMDDS-EQREKLNHDLKEMEVLVKEGVAYARTLHGTSEPPRAI 296 Query: 299 DLAGLLEDVAAKSSRLADVKITTQITPATEVAGNGTELARVFSNLVENARRYGKTADSDC 358 D LLE + + A ++ + L RV NL++NA ++ S Sbjct: 297 DPDALLESLVFDYTD-AGQELDLHGKVGHPIITRPNALRRVLINLIDNALKF-----STQ 350 Query: 359 AEIHIRSRIEGQQVVVEVFDHGSGVPENECERLLRPFTRLDTARGQ-ANGSGLGLAIVNR 417 E+ + + EG+ ++ V D+G G+PE + E + +PF R++ +R + G+GLGLAI + Sbjct: 351 VEVSVSAGPEGKTTIL-VLDNGPGIPEEDLETVFQPFYRVEASRNRDTGGTGLGLAIAKQ 409 Query: 418 IVLKHNGKLVLKGHEEHYGGLLVQISL 444 + L N L L H GGL ++ L Sbjct: 410 LTLAMNASLTL--HNRATGGLEARLVL 434 >gi|152982315|ref|YP_001354919.1| two component sensor histidine kinase protein [Janthinobacterium sp. Marseille] Length = 427 Score = 119 bits (298), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 86/258 (33%), Positives = 135/258 (52%), Gaps = 22/258 (8%) Query: 195 AIAKGRQPEPLPESGPTEIEEANRSFNQMVADLNRIESDRALILAGISHDLRTPLARMQL 254 A+ G+ + G E+ SFN+ A + + + +LA SH+LR+PLAR+++ Sbjct: 184 ALGAGQLSTRIKVEGKDEVGRLATSFNRSAARIEALVDAQKALLANASHELRSPLARIRM 243 Query: 255 EVEM--ANLSDESRDGMHSDLAQMDSIIGQFLDYAKPFD-----TNNLETIDLAGLLEDV 307 VE+ A+ E R+ + ++ ++D +I + L A D T E IDL L V Sbjct: 244 AVELMAADAQPEMRNELKRNIGELDQLIDEIL-LASRLDATADATQVFEPIDLTAL---V 299 Query: 308 AAKSSRLADVKITTQITPATEVAGNGTELARVFSNLVENARRYGKTADSDCAEIHIRSRI 367 A + +R+ D ++ TQ + E+ G+ L R+ NL+ENARRYG + I + Sbjct: 300 AEECARI-DAQLETQ---SVEIPGDARLLRRMVRNLLENARRYG-----NGTAIDVSLEK 350 Query: 368 EGQQVVVEVFDHGSGVPENECERLLRPFTRLDTARGQANGSGLGLAIVNRIVLKHNGKLV 427 G +VV++V D G GVP E E + PF RL A + G GLGL++V +I H G++V Sbjct: 351 TGNKVVLQVCDGGPGVPVAERENIFAPFYRLPGASEREGGVGLGLSLVQQIARAHGGEVV 410 Query: 428 LKGHEEHYGGLLVQISLP 445 G E GG +++LP Sbjct: 411 CTGREG--GGSCFKVTLP 426 >gi|152981014|ref|YP_001353510.1| two-component regulatory protein sensor kinase for high-affinity potassium transport system [Janthinobacterium sp. Marseille] Length = 908 Score = 83.6 bits (205), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 113/236 (47%), Gaps = 24/236 (10%) Query: 227 LNRIESDRAL--ILAGISHDLRTPLARM--------QLEVEMANLSDESRDGMHSDLAQM 276 L R+ES+R +LA ISHDLRTPL + + + E+A E +H + +M Sbjct: 662 LLRMESERLRNSLLAAISHDLRTPLTALVGLSESLTRSKPELAAAQQELAHALHEEALRM 721 Query: 277 DSIIGQFLDYAKPFDTNNLETIDLAGLLEDVAAKSSR-----LADVKITTQITPATEVAG 331 +++ LD A+ + ++ E+V S R L ++ T++ P + Sbjct: 722 GNLVTNLLDMAR-IQSGEVKLNLQWQQFEEVVGSSLRAVQSLLGRHQVHTRLAPGLPLVN 780 Query: 332 -NGTELARVFSNLVENARRYGKTADSDCAEIHIRSRIEGQQVVVEVFDHGSGVPENECER 390 + + RV NL+ENA +Y ++I I + + GQ + V V+D+G G+P + E Sbjct: 781 FDAVLIERVLCNLLENASKYTPAG----SQITIAAELSGQYLDVAVYDNGPGLPPGQEEA 836 Query: 391 LLRPFTRLDTARGQANGSGLGLAIVNRIVLKHNGKLVLKGHEEHYGGLLVQISLPL 446 + FTR + G GLGLAI I+ H+G ++G GG + +LPL Sbjct: 837 IFEKFTRGER-ESATPGVGLGLAICRAIIEAHHG--TIRGGHSPQGGAAIIFTLPL 889 >gi|152982293|ref|YP_001351978.1| two-component sensor histidine kinase [Janthinobacterium sp. Marseille] Length = 439 Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 88/321 (27%), Positives = 140/321 (43%), Gaps = 35/321 (10%) Query: 140 DDQYWLMLDRGRLDRTSSLQWLGWGSIALFLSLIGAVFISTLINQPLARLTAAARAIAKG 199 D + L ++R DR S L G I L +S+ GA+ + Q L+ + I G Sbjct: 133 DINHQLEIER-LFDRAS----LIAGLIGLLMSIAGALLFRRELGQRLSGIHQIVTHIEAG 187 Query: 200 RQPEPLPE-SGPTEIEEANRSFNQMVADLNRIESDRALILAGISHDLRTPLARMQL---- 254 +P E +R N M+ R+ I I+H+LRTP+ R+ L Sbjct: 188 DLSRRIPLLQQEDEFSRLSRDINSMLDQQQRLMDGVRHISNTIAHNLRTPMTRILLRLRK 247 Query: 255 -EVEMANLSDESRDGMHSDLAQMDSIIGQFLDYA--------KPFDTNNLETI--DLAGL 303 E E A DE+ ++ + + + L+ A + F + +L + D+ L Sbjct: 248 SEHEGAQARDEALQFALHEMEDLSVMFNKLLNLAEVESGTRRQSFSSISLNDVVADVLEL 307 Query: 304 LEDVAAKSSRLADVKITTQITPATEVAGNGTELARVFSNLVENARRYGKTADSDCAEIHI 363 E VA + S V++T G+ LA +NLV+NA +Y ++ E+ Sbjct: 308 YEPVAEEKS----VQLTAVFEAEPVTNGDRELLASAIANLVDNALKYA--GENAAVEVRT 361 Query: 364 RSRIEGQQVVVEVFDHGSGVPENECERLLRPFTRLDTARGQANGSGLGLAIVNRIVLKHN 423 + + G ++V D+GSG+P E R+ F RLD +R G GLGLA V I H Sbjct: 362 STDVHGAAIIVR--DNGSGIPATELSRIGTHFYRLDRSRP---GYGLGLASVLAIARLHG 416 Query: 424 GKLVLKGHEEHYGGLLVQISL 444 G L + GL+V+++L Sbjct: 417 GNLEFS---DANPGLIVRMTL 434 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.135 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 988,267 Number of extensions: 39503 Number of successful extensions: 210 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 192 Number of HSP's successfully gapped: 21 Length of query: 453 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 367 Effective length of database: 903,079 Effective search space: 331429993 Effective search space used: 331429993 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)