BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2003.p
         (359 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980345|ref|YP_001353215.1| alanine racemase [Janthinobacte...   487   e-139

>gi|152980345|ref|YP_001353215.1| alanine racemase
           [Janthinobacterium sp. Marseille]
          Length = 359

 Score =  487 bits (1253), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 234/359 (65%), Positives = 278/359 (77%)

Query: 1   MPRPILASISISALQHNLAVARAHAPQARVWGVLKANGYGHGLERAMRGFAAADGLALVE 60
           MPRP++A+I I+AL+ NLA+A+A AP ++ W V+KAN YGHGLER MRGFAAADGL L+E
Sbjct: 1   MPRPLIATIDIAALRSNLALAKARAPHSKAWAVVKANAYGHGLERGMRGFAAADGLGLIE 60

Query: 61  PDYAVRLRELGWTKPILLLEGFFDADDLPVLAQHDIQFAVHCDQQIALLEQFVTDSALHV 120
            D A RLRELGW K ILLLEGFFDA D  +LA+H +   +HC++Q+ +LEQ    + + V
Sbjct: 61  LDAAARLRELGWNKRILLLEGFFDASDTKLLAEHRLDTVIHCEEQLLMLEQAKLRTQIDV 120

Query: 121 HLKMNSGMNRLGFKPEAFRAAYERVQKIASVRSITMMTHFANADDAGNPALPLAEQVRRF 180
           HLK+NSGMNRLGF P  +RAAYER++ I +VR I+ +THFANA+D  NP LP+ EQVRRF
Sbjct: 121 HLKLNSGMNRLGFTPARYRAAYERLRAIPAVRHISFVTHFANAEDPDNPVLPVQEQVRRF 180

Query: 181 QAGTEGLAGPRSLCNSAADLMHGELANDWIRPGIMLYGGTPGGGSAADFGLRAAMILESK 240
           +  T  L G +SL NSA DL+H   A DWIRPGIMLYG TPG  SA  FGLRAAM L S+
Sbjct: 181 KEATRDLPGEKSLANSATDLLHPAAAADWIRPGIMLYGATPGAQSAEQFGLRAAMSLHSE 240

Query: 241 IIGVQEVPAGEAIGYGSRFVADKPMRVGVVACGYADGYPRHAPSGTPVLVDGVKTATVGR 300
           IIGVQ + AG+A+GYGS FVA  PM +GVVACGYADGYPRHAPSGTPV+VDGVKT  VGR
Sbjct: 241 IIGVQHIVAGDAVGYGSAFVATAPMTIGVVACGYADGYPRHAPSGTPVIVDGVKTRMVGR 300

Query: 301 VSMDMLCVDLSDVPGATVGSHVELWGNRLPIDEVAFAAGTIGYELMCALAPRVAVREVE 359
           VSMDM+ VDL+ V    +GS V LWG  LPIDEVA AAGT+GYELMC LAPRV + EV 
Sbjct: 301 VSMDMITVDLTPVAKPRIGSKVTLWGASLPIDEVANAAGTVGYELMCGLAPRVQIVEVN 359


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 932,421
Number of extensions: 42621
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 275
Effective length of database: 910,473
Effective search space: 250380075
Effective search space used: 250380075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)