BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2001.p
         (343 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981803|ref|YP_001353213.1| hypothetical protein mma_1523 [...   268   5e-73

>gi|152981803|ref|YP_001353213.1| hypothetical protein mma_1523
           [Janthinobacterium sp. Marseille]
          Length = 330

 Score =  268 bits (684), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 162/329 (49%), Positives = 200/329 (60%), Gaps = 23/329 (6%)

Query: 10  QMRFHQRWPELRDPHVRALAWLLYAPDLLAPEAACWEGRIASL-GVLSPEVAGWLHDLQY 68
           Q +F QRW  L D HVRALAWLL APDLL P+A  W G+IASL G L   +  WL  L  
Sbjct: 18  QAQFEQRWGHLNDIHVRALAWLLDAPDLLDPQAPQWRGKIASLQGSLPHGLDAWLQALDR 77

Query: 69  DPALNAALHAHMAQQPSARLGGRYAEKLLGFYLRQQDCLVAANLQVHNQGPKRETLGEFD 128
           +PA    LH ++  Q   RLG RYAEKLL +Y   +  L A  +QV  +  K  T+GEFD
Sbjct: 78  NPA---ELHRYLNVQAFTRLG-RYAEKLLAYYFEYRGVLAAHGVQV--RAGKNSTIGEFD 131

Query: 129 FLVRSPEAESDGGVVHWEFATKFYLLQGRDSAARQAADAFVGPNLADSLGRKMRKIMQHQ 188
           FL+R  +A     +VHWEFATKFYLL+   S A + AD FVGPNLAD+LG KM KI++ Q
Sbjct: 132 FLLREGDA-----LVHWEFATKFYLLES--SGAGEDADYFVGPNLADTLGAKMHKILERQ 184

Query: 189 LMLSSHPAAQAVLPAPVVAARALVKGWLFYRQGEALVLPPAMGIAADHCRGFWCDASGLQ 248
           L+LS HPAAQ  LPAPV  A+ALVKGWLFY  G+      + GI+A HCRGFWC    L+
Sbjct: 185 LLLSQHPAAQVHLPAPVTRAQALVKGWLFYHSGDK-ADAASFGISAGHCRGFWCALGELE 243

Query: 249 ALDDGSDDKMRYALLPRLSWLAPARLPPEQGMSLTQLLLRLEEMFRADDNPVMVAQCRLE 308
               G++   RYA+LPRL WLAPA+L   Q M    L   L   F  D  PV+V    ++
Sbjct: 244 --QAGAE---RYAVLPRLHWLAPAKLDVSQTMDKDSLQQMLAAHFVHDTMPVLVILLDVK 298

Query: 309 QGAQPELLETARAFIVPPQWEARAADTVR 337
                  LE++R F+VP  W  RA   ++
Sbjct: 299 GNVA---LESSRGFVVPDDWRTRAGQRIK 324


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 811,291
Number of extensions: 32632
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 259
Effective length of database: 910,473
Effective search space: 235812507
Effective search space used: 235812507
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)