BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1999.p
         (164 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980383|ref|YP_001353211.1| ribosomal-protein-alanine N-ace...   167   2e-43

>gi|152980383|ref|YP_001353211.1| ribosomal-protein-alanine
           N-acetyltransferase [Janthinobacterium sp. Marseille]
          Length = 167

 Score =  167 bits (424), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/158 (53%), Positives = 105/158 (66%), Gaps = 5/158 (3%)

Query: 7   PPTVSHPRYGILQFGVMSAADLDAVVQIEDAVYSHPWTRGNFQDSLYSGYQAQTLRDARG 66
           PP V       L F  M A D+  V+ IE+ VY  PWTRGNF DS+ SGY+   LRD  G
Sbjct: 15  PPPVQK-----LYFYRMQATDISDVLAIENDVYPFPWTRGNFLDSINSGYETWILRDGSG 69

Query: 67  QLLGYFLVMLAVDEAHLLNISVAAAHQHQGLGRLLLDRATAVARQHQMRMMLLEVRESNL 126
            L GYFL+M +VD+AHLLNI+V    Q QG+G LLLD+A A+A++ ++  +LLEVR SN 
Sbjct: 70  ALNGYFLLMPSVDDAHLLNITVHRDLQGQGIGLLLLDKAKAIAQERKLEAILLEVRPSNT 129

Query: 127 HAAKVYRHYGFTEIGRRKNYYPAANQTREGAIVMSLPL 164
            A K+YR YGF+ IG RK YYPA N  RE A+VM L L
Sbjct: 130 RAEKIYRRYGFSRIGVRKGYYPAPNNQREDALVMKLAL 167


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 360,537
Number of extensions: 13065
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 88
Effective length of database: 940,049
Effective search space: 82724312
Effective search space used: 82724312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)