BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1998.p
         (239 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980287|ref|YP_001353210.1| glycoprotease [Janthinobacteriu...   249   9e-68

>gi|152980287|ref|YP_001353210.1| glycoprotease [Janthinobacterium
           sp. Marseille]
          Length = 232

 Score =  249 bits (637), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 138/236 (58%), Positives = 166/236 (70%), Gaps = 6/236 (2%)

Query: 1   MSTILAIETSTELASAALLYRGELIARQSAGAQTHSDAILPMIQHLLADAGLALSQCDAL 60
           MSTILAIETS+ELASAALL+     +RQ+AG  THS +ILPM+Q LL DAG++L  CDA+
Sbjct: 1   MSTILAIETSSELASAALLHNDVCSSRQTAGVSTHSQSILPMVQALLQDAGISLRDCDAI 60

Query: 61  AFGVGPGSFTGVRTACGVVQGLAFGCDRPVVPVVTLEAAAQACHAEDANAVEVLAILDAR 120
           AFG GPGSFTGVRTACG+ QGLA+G D+P++P VTL A AQAC  E   A +VLA+LDAR
Sbjct: 61  AFGAGPGSFTGVRTACGIAQGLAYGADKPLLPTVTLLALAQACR-EQTGANDVLAVLDAR 119

Query: 121 MGEVYWARYRSRLDGGWEVLAEPALSPAARVTIDGRPYACGNGLAVYAEHFTESFCGSRF 180
           MGEVYWA+Y  R D  W+V+  P LS AA V   G   ACGNGL  YA  F        F
Sbjct: 120 MGEVYWAQY--RFDVTWQVVIAPTLSSAADVQPQGEVVACGNGLQAYAADFAAR---PFF 174

Query: 181 AAVYPQAMPHARHVATLGQMHFARGLALPAEEAQPLYLRNKVALTTAEREERDAAK 236
           AA     +P A  +A LG + +A+GLA+ A  A+PLYLRNKVALTT ER E+ A +
Sbjct: 175 AAALKDMLPQATQIARLGAIAYAQGLAVVASAAEPLYLRNKVALTTMERLEKAAKE 230


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.132    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 530,360
Number of extensions: 21289
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 158
Effective length of database: 921,564
Effective search space: 145607112
Effective search space used: 145607112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)