BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1996.p (303 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980915|ref|YP_001353545.1| LysR family transcriptional reg... 204 5e-54 gi|152980832|ref|YP_001354031.1| LysR family transcriptional reg... 197 8e-52 gi|152982904|ref|YP_001352613.1| LysR family transcriptional reg... 188 4e-49 gi|152983030|ref|YP_001352585.1| LysR family transcriptional reg... 182 2e-47 gi|152980272|ref|YP_001353541.1| LysR family transcriptional reg... 177 7e-46 >gi|152980915|ref|YP_001353545.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 300 Score = 204 bits (519), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 114/293 (38%), Positives = 173/293 (59%), Gaps = 3/293 (1%) Query: 1 MDRLQSMRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTE 60 MDRL +M+VF VV+ GS AA+ LD+S V +R++A+LE G RLL+R+TR+LSLT Sbjct: 1 MDRLSAMQVFVTVVDSGSQSAAADQLDLSRPVVSRYLAELEEWAGARLLHRTTRKLSLTA 60 Query: 61 AGQAYLERVRMILAEVDDAEALVSLETKRPAGTLAIYSNAGFGQSQLGEMLAAYAETYPE 120 AG L R R +L D + +V++ P G L I + FGQS L +A Y + YP Sbjct: 61 AGAEMLPRCRQMLELATDMKNVVAIPEDAPQGLLRITVSTSFGQSHLAAAVADYVKLYPG 120 Query: 121 VALDINLSDRSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVARVILCASPAYLARHGAPE 180 V +D+ + DR ++LVEE ID+ S ++ D ++I R+L V R ++CA+PAYL HG P Sbjct: 121 VTVDMLVLDRVVNLVEERIDLAIRIS-KELDPNLIARRLTVCRSVVCAAPAYLHEHGKPT 179 Query: 181 QPEDLSRHSCLNFSHEYLRHHWHVNTAAGVMDVPIVSKVVSNSGVLLRDLALAGMGIVLR 240 Q E L H+CL +H Y W + ++V + + +N L ALAG GI + Sbjct: 180 QAEQLVLHNCL--THSYYGSVWLLERDKLPVNVAVKGNISANDASSLLPAALAGAGIAML 237 Query: 241 PSYSLGDDLRCGKLVQVLPDFDMGQVVISMVYPSRRLLSAKVRSFADFVSARF 293 P++ +R G+L+ +LP++ + + VY SR+ + A +R+ DF++ARF Sbjct: 238 PTFLAAPYIRSGQLLPLLPEYHPQEFGLFGVYASRKHMPATLRTMLDFLAARF 290 >gi|152980832|ref|YP_001354031.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 304 Score = 197 bits (500), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 109/294 (37%), Positives = 164/294 (55%), Gaps = 2/294 (0%) Query: 1 MDRLQSMRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTE 60 M+ L + F+ +V+QGS A L ++ T+ +A+LE LG RLLNR+TR +S+T Sbjct: 1 MNDLSDLAFFSVLVKQGSLAAVARELGVTPPAVTKRLANLEQRLGVRLLNRTTRTMSVTH 60 Query: 61 AGQAYLERVRMILAEVDDAEALVSLETKRPAGTLAIYSNAGFGQSQLGEMLAAYAETYPE 120 G+ YL IL E+++ E VS P G L I + GFG+ + ++ + E YPE Sbjct: 61 EGEIYLAEGARILTEIEELERAVSRSRAVPKGLLRINATFGFGRRHIAPAVSDFIEKYPE 120 Query: 121 VALDINLSDRSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVARVILCASPAYLARHGAPE 180 + + + LSDR +L+++ DIG + DA +I R++ R +LCA+PAY+ RHG P Sbjct: 121 IEVQLQLSDRPANLIDQAFDIGIRIG-EMPDARIIARKIAANRRLLCAAPAYIKRHGTPS 179 Query: 181 QPEDLSRHSCLNF-SHEYLRHHWHVNTAAGVMDVPIVSKVVSNSGVLLRDLALAGMGIVL 239 P DL + C+ ++ WH++ + + + SN G ALAG GI++ Sbjct: 180 VPRDLQKLQCIVLRENDAAYGSWHLHKGKRQESIKVRGALSSNDGETTLAWALAGHGILM 239 Query: 240 RPSYSLGDDLRCGKLVQVLPDFDMGQVVISMVYPSRRLLSAKVRSFADFVSARF 293 R + + LR G+LV+VL D+ + I VYP R LSAKV +F DFVSARF Sbjct: 240 RSQWDVAAYLRSGRLVEVLADWSLPPSDIYAVYPERLNLSAKVTAFVDFVSARF 293 >gi|152982904|ref|YP_001352613.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 314 Score = 188 bits (477), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 105/292 (35%), Positives = 169/292 (57%), Gaps = 1/292 (0%) Query: 2 DRLQSMRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTEA 61 DR +SM + +VV+ GSF AA L I A +R I +LE L TR+L RSTR+LS+TEA Sbjct: 3 DRFESMALLVEVVDAGSFSGAARRLGIPLATVSRKIGELETMLKTRVLQRSTRQLSMTEA 62 Query: 62 GQAYLERVRMILAEVDDAEALVSLETKRPAGTLAIYSNAGFGQSQLGEMLAAYAETYPEV 121 GQAY+ R IL EVD+AE VS E P G L I + FG+ + ++A + + YP++ Sbjct: 63 GQAYVAACRRILEEVDEAERAVSGEYAAPKGDLVITTPIVFGRKHVMPVVAQFLKAYPDI 122 Query: 122 ALDINLSDRSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVARVILCASPAYLARHGAPEQ 181 + + L+D + L+EE +DI + D++M+ ++G ++CASPAYL ++G P++ Sbjct: 123 NVRVVLADHVVHLLEEHVDIAVRVG-ELPDSNMVAARIGTINRVMCASPAYLKKNGTPKK 181 Query: 182 PEDLSRHSCLNFSHEYLRHHWHVNTAAGVMDVPIVSKVVSNSGVLLRDLALAGMGIVLRP 241 P+DLS+H C+ F W + ++VP+ S+VV N+ + A + +GI Sbjct: 182 PDDLSKHQCITFDGLMAPKLWQLCENGREINVPVFSRVVVNTAEAAIEAAESDIGITSVL 241 Query: 242 SYSLGDDLRCGKLVQVLPDFDMGQVVISMVYPSRRLLSAKVRSFADFVSARF 293 Y + + +R +L VL +++ I++V+ + +L KVR+F D+ R Sbjct: 242 CYQIAERVRDKQLKMVLREYEREAWPINLVHAGQGILPLKVRAFLDYARPRL 293 >gi|152983030|ref|YP_001352585.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 182 bits (463), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 104/305 (34%), Positives = 174/305 (57%), Gaps = 14/305 (4%) Query: 1 MDRLQSMRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTE 60 MD+LQ+M+VF +VVE GSF A D + + ++ +A LE LG RLL R+TR L+LTE Sbjct: 1 MDKLQAMKVFVRVVEAGSFSAVAHESDTTQSAVSKQVAALERELGVRLLTRTTRSLALTE 60 Query: 61 AGQAYLERVRMILAEVDDAEALVSLETKRPAGTLAIYSNAGFGQSQLGEMLAAYAETYPE 120 G+ Y E++R ++AE+ +AE + ++ G L I ++ GFG+ +L ++ ++ + Sbjct: 61 EGERYFEQLRRLIAEISEAEGELQRGEQQLTGWLRIAASVGFGRLKLMPLVQSFLAEHRG 120 Query: 121 VALDINLSDRSIDLVEEGIDIGF-FSSMQKFDASMIVRQLGVARVILCASPAYL----AR 175 V +D+ L D IDLVE+GID+ + D+S+I R++G A +L A +YL Sbjct: 121 VKIDLRLHDGFIDLVEQGIDVAVRLGDLP--DSSLIARRVGTASRMLMAHRSYLRSLPKG 178 Query: 176 HGAPEQPEDLSRHSCLNFSHEYLRHHWHVNTAAGVMDVPIVSKVV-------SNSGVLLR 228 P P+DLS H+C+ ++ +R+ W+ G D +++V +NS ++R Sbjct: 179 TKTPITPDDLSEHNCIVYTELAMRNTWNFKAGPGAPDAIGTTRIVRVEGNLQTNSSEVIR 238 Query: 229 DLALAGMGIVLRPSYSLGDDLRCGKLVQVLPDFDMGQVVISMVYPSRRLLSAKVRSFADF 288 L GMGI P++ +L G++ ++LPD++ + I +V P R SAKV++FA+ Sbjct: 239 ASILGGMGITYSPTWLFEKELASGEVQRILPDWETLPIPIQLVSPRERRHSAKVKAFAEH 298 Query: 289 VSARF 293 V + Sbjct: 299 VGQKL 303 >gi|152980272|ref|YP_001353541.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 308 Score = 177 bits (449), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 100/294 (34%), Positives = 164/294 (55%), Gaps = 2/294 (0%) Query: 1 MDRLQSMRVFAKVVEQGSFVRAAELLDISNAVATRFIADLEAHLGTRLLNRSTRRLSLTE 60 MD + + F+ +V++GS AA+ L ++ ++ +A +E+ L RLLNR+TRR+SLT Sbjct: 1 MDGISDLAFFSLLVKRGSLAAAAQELGVTPPSVSKRLAGIESRLRVRLLNRTTRRISLTP 60 Query: 61 AGQAYLERVRMILAEVDDAEALVSLETKRPAGTLAIYSNAGFGQSQLGEMLAAYAETYPE 120 G+ YL ++AE++ E +S G L + + GFG+ + L+A+A YPE Sbjct: 61 EGEIYLADGTRLVAELEALEQRISGGNITAKGLLKVSATFGFGRRHITPQLSAFARLYPE 120 Query: 121 VALDINLSDRSIDLVEEGIDIGFFSSMQKFDASMIVRQLGVARVILCASPAYLARHGAPE 180 V + ++L+DR ++LVE+G D Q DA + R++ R ++CASPAYL +HG P Sbjct: 121 VEVQLHLTDRPVNLVEQGFDADIRFG-QIPDARLSARKIADNRRLVCASPAYLQKHGTPL 179 Query: 181 QPEDLSRHSCLNFSH-EYLRHHWHVNTAAGVMDVPIVSKVVSNSGVLLRDLALAGMGIVL 239 P DL +H+C+ + + WH ++ V + + +N G AL G GIV+ Sbjct: 180 VPRDLQQHNCILLRESDEIYGSWHFSSGIKQETVKVRGALSANDGECATSWALDGQGIVV 239 Query: 240 RPSYSLGDDLRCGKLVQVLPDFDMGQVVISMVYPSRRLLSAKVRSFADFVSARF 293 R + + LR G+L VL ++ + Q I +V+P++ LSAK R+ DF+ F Sbjct: 240 RSEWDVAPYLRSGRLRAVLEEWQLPQADIYIVFPTKNHLSAKTRALVDFMLQAF 293 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 637,961 Number of extensions: 24861 Number of successful extensions: 163 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 122 Number of HSP's successfully gapped: 31 Length of query: 303 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 220 Effective length of database: 914,170 Effective search space: 201117400 Effective search space used: 201117400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)