BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1994.p
         (428 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980089|ref|YP_001353794.1| aspartate kinase [Janthinobacte...   724   0.0  

>gi|152980089|ref|YP_001353794.1| aspartate kinase
           [Janthinobacterium sp. Marseille]
          Length = 417

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/417 (88%), Positives = 396/417 (94%)

Query: 12  MALYVHKYGGTSMGSIERIQNVAKRVAKWHDAGHQIVVVPSAMSGETNRLLGMAKEIMAQ 71
           MAL VHKYGGTSMGS ERI+NVA+RVAKWHDAG+QIVVVPSAMSGETNRL+G+AKE+M Q
Sbjct: 1   MALIVHKYGGTSMGSTERIKNVARRVAKWHDAGYQIVVVPSAMSGETNRLIGLAKELMPQ 60

Query: 72  PDGRELDMLASTGEQVSVALLAIALQALGKQAVSYAGWQVPIKTDSAFTKARIRSIDDAK 131
           P+ RELDMLASTGEQVSVALLA+ALQ++GK+AVSYAGWQV IKTDSAFTKARI+SIDDAK
Sbjct: 61  PNPRELDMLASTGEQVSVALLAMALQSIGKEAVSYAGWQVAIKTDSAFTKARIQSIDDAK 120

Query: 132 VRKDLNAGKIVIITGFQGVDADGNITTLGRGGSDTSAVAVAAAMKAAECLIYTDVDGVYT 191
           V+KDL+AG+IVIITGFQGVD DGNI TLGRGGSDTSAVAVA A+KA ECLIYTDVDGVYT
Sbjct: 121 VQKDLDAGRIVIITGFQGVDDDGNIATLGRGGSDTSAVAVAVALKAQECLIYTDVDGVYT 180

Query: 192 TDPRVVSDARRLKTVTFEEMLEMASLGSKVLQIRSVEFAGNYKMPTRVLSSLTDPLTPLA 251
           TDPRVVS+ARRL TVTFEEMLEMASLGSKVLQIRSVEFAGNYKMPTRVLSSLTDP+ PL 
Sbjct: 181 TDPRVVSEARRLNTVTFEEMLEMASLGSKVLQIRSVEFAGNYKMPTRVLSSLTDPMIPLE 240

Query: 252 EEAASGTLISFEEDKNMEQATITGIAFSRDEAKITVLGVPDRPGIAYQILGPVADANIEV 311
           EEA SGTLISFEED +MEQA ITGIAF+RDEAKITVLGVPDRPGIAYQILGP+A AN+EV
Sbjct: 241 EEAKSGTLISFEEDTHMEQAAITGIAFNRDEAKITVLGVPDRPGIAYQILGPIAAANVEV 300

Query: 312 DMIIQNQSVEGKTDFTFTVPRGEYAKAVEVLNASVKAHIGAAAINGDTKVSKVSVVGVGM 371
           DMIIQNQSV+GKTDFTFTVPRG+YAKAV+VLN SVKAHIGAA+I GDTKVSKVSVVGVGM
Sbjct: 301 DMIIQNQSVDGKTDFTFTVPRGDYAKAVDVLNESVKAHIGAASIQGDTKVSKVSVVGVGM 360

Query: 372 RSHVGIASQMFRTLSEEGVNIQMISTSEIKISVLIDEKYMELAVRALHKAFDLDSAK 428
           RSHVGIASQMFRTLSEEG+NIQMISTSEIKISVLIDEKYMELAVRALHK FDL+ + 
Sbjct: 361 RSHVGIASQMFRTLSEEGINIQMISTSEIKISVLIDEKYMELAVRALHKTFDLEKSN 417


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.131    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 873,754
Number of extensions: 33422
Number of successful extensions: 120
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 342
Effective length of database: 903,079
Effective search space: 308853018
Effective search space used: 308853018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)