BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1991.p
         (177 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981692|ref|YP_001353380.1| superoxide dismutase [Janthinob...    60   7e-11

>gi|152981692|ref|YP_001353380.1| superoxide dismutase
           [Janthinobacterium sp. Marseille]
          Length = 173

 Score = 60.1 bits (144), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 21/143 (14%)

Query: 43  GEVTISETPYGLLFKPALSGLPAGVHGFHVHQNPSCAPLEKDGKMEPALAAGGHWDPQKT 102
           G VT S++   +     ++GL AG+HGFH+H+   C+  +        ++ GGH++P   
Sbjct: 42  GTVTFSQSGDKVKVAARITGLSAGLHGFHIHEKGDCSAPD-------GMSTGGHFNPDGK 94

Query: 103 GKHEGP-YGEGHLGDLPALYVTADGRADNPVLAPRLKSIA-------ELRGHALMVHVGG 154
            KH  P + E H GD   L   ++G A   VL      I+        + G  L+VH   
Sbjct: 95  -KHGAPGHNEHHAGDFGNLSPDSNGTA---VLTLTTSQISLDPNASNSIIGKGLIVHADP 150

Query: 155 DNHSDHPATLGGGGARLACGVIQ 177
           D+ +  P   G  G RL+CGVI+
Sbjct: 151 DDFTTQPT--GNSGKRLSCGVIR 171


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 492,418
Number of extensions: 22870
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 177
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 100
Effective length of database: 936,352
Effective search space: 93635200
Effective search space used: 93635200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)