BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1990.p (697 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protei... 459 e-130 gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [... 439 e-124 gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protei... 397 e-111 gi|152981462|ref|YP_001353834.1| signal transduction protein [Ja... 367 e-102 gi|152983039|ref|YP_001352601.1| sensory box protein [Janthinoba... 342 5e-95 >gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 910 Score = 459 bits (1181), Expect = e-130, Method: Compositional matrix adjust. Identities = 252/590 (42%), Positives = 366/590 (62%), Gaps = 15/590 (2%) Query: 97 LALLASFLGRL-MQRRADSDKRSRALDQIEAKLEQQAQILNQMHESVITMD--PAGFITS 153 +ALL S R+ ++ RA D+ R + +L ++A I + +I+ P I Sbjct: 317 VALLVSLAQRVTVEIRAHRDRHGRQAAEAALRLRERA-IECSANAVIISSAQVPEFAIEY 375 Query: 154 WNRGAEQLFGYTSLEAIGRNVLFLYENEEEEDAMH---ALFLEHGSREIEVRRRKKSGEV 210 N E++ GYT+ EAIGR+ FL N+ E+ ++ A E + +R +K+G + Sbjct: 376 VNPAFERITGYTAAEAIGRSSSFLLRNDHEQAGLYEIRAALAEKREGKAVLRNYRKNGSL 435 Query: 211 FWASLSLSVMRDQNGHPIGLIGYLNDITERKNAEKLIHHLAYYDALTGLPNRTLLTRTVD 270 FW L ++ ++D G + ++DIT K E +H LA +D LTGLPNR LL ++ Sbjct: 436 FWNDLYIAPVKDDEGKTTHFVAAMSDITPMKQYETTLHRLASHDVLTGLPNRALLQDRLE 495 Query: 271 QALTAAQHENLQGCVMFIDLNRFKPINDTLGHVAGDMLLVEVAIRLRRALREQDVVARLG 330 A+ + V+ +DL+RFK +NDT+GH AGD+LL ++ RL+ ++RE D VARLG Sbjct: 496 NAIAYSARNGHAVWVVLVDLDRFKFVNDTMGHQAGDVLLKIISDRLQASVRESDTVARLG 555 Query: 331 ADEFAVALFDIDKDHHPGY---VAQKLLSLFDEPFFIDGHELRVGASIGVSMYPEDASDT 387 DEF + L + D GY V Q+++ +P I G E + S+G+++YP D +D Sbjct: 556 GDEFVLVLPEC-GDGPSGYSSDVIQRIMEAVVKPLTIQGSEFFLSCSMGIAVYPNDGADP 614 Query: 388 ETLLRLADIAMYRAKQGGDNNEGGYVYYSEEMNRNTLDLLRIETGLLHAFEYNELLLYYQ 447 TLL AD+AMYR+K+ G NN + +Y+ MN L+ LRIE L HA E NEL+L+YQ Sbjct: 615 TTLLAHADVAMYRSKELGRNN---FQFYTPAMNDQALERLRIEGELRHAIELNELVLHYQ 671 Query: 448 PKVDMNTLAITGGEALVRWQHPERGLLLPGEFIPIAEETGLIVQLSDWVLDAVCRQARAW 507 P+VD++T AI G EALVRW HP G++ PG FI +AEETGLI+ + WVL CRQA+AW Sbjct: 672 PQVDLHTGAIVGLEALVRWNHPILGMVQPGSFISLAEETGLIIPIGAWVLQTACRQAKAW 731 Query: 508 KEAGLAPIRIALNVTAREFTR-SLPDRVRAALNRHALSGDWLEIEITESMLMHSTDRVIS 566 ++ G +RIA+N++AR+FT+ SL + ++ L L +LEIE+TES +M +R I Sbjct: 732 QDMGFTQLRIAVNLSARQFTQASLLESIKDTLQETGLEARFLEIELTESSVMADIERNIL 791 Query: 567 IMEKICSLGITISLDDFGTGYSSLSYLKRFPINTLKIDRSFTMGIPDDTNDCAIASAIIG 626 + + SLG+ +S+DDFGTG+SSL+YLKRFPI+TLKIDRSF I + +D +I S+II Sbjct: 792 TLRDLKSLGVQLSVDDFGTGHSSLAYLKRFPIDTLKIDRSFVRDIAINQDDASIVSSIIS 851 Query: 627 IAKQLRHKVIAEGVETEKQFNFLREAGCNELQGFLFSCPVPADDFHAMLL 676 +A L+ VIAEGVET Q + LR GCNE+QG+ F P+P+D +LL Sbjct: 852 LAHNLKLNVIAEGVETASQMDILRAQGCNEIQGYYFCKPLPSDQIETLLL 901 >gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [Janthinobacterium sp. Marseille] Length = 956 Score = 439 bits (1128), Expect = e-124, Method: Compositional matrix adjust. Identities = 230/533 (43%), Positives = 338/533 (63%), Gaps = 9/533 (1%) Query: 155 NRGAEQLFGYTSLEAIGRNVLFLYENEEEE---DAMHALFLEHGSREIEVRRRKKSGEVF 211 N ++ GY+ EA+GRN+ FL+ + E+ + + ++ LE +R +K G +F Sbjct: 420 NPAFTRITGYSPEEALGRNIGFLWGKDWEQPGIEELRSIALEKREGHAVLRNYRKDGALF 479 Query: 212 WASLSLSVMRDQNGHPIGLIGYLNDITERKNAEKLIHHLAYYDALTGLPNRTLLTRTVDQ 271 W+ L ++ ++D G + L DIT K E + DALTGL NR+LL + Q Sbjct: 480 WSDLYIAPVKDDTGEVSHFVVALYDITATKRYESELEFQTNRDALTGLANRSLLRDRLSQ 539 Query: 272 ALTAAQHENLQGCVMFIDLNRFKPINDTLGHVAGDMLLVEVAIRLRRALREQDVVARLGA 331 A++ A N + F+DL+RFK +NDTLGH AGD+LL +A RL+ A+R+ D V+R+G Sbjct: 540 AISYAHRYNHPIWIAFVDLDRFKFVNDTLGHQAGDLLLKAIAERLQHAVRDTDTVSRMGG 599 Query: 332 DEFAVALFD-IDKDHHPGYVAQKLLSLFDEPFFIDGHELRVGASIGVSMYPEDASDTETL 390 DEF + L + +D G V Q+++ +P I+GHE + +SIGV++YP D E L Sbjct: 600 DEFVLILPERVDAGLSTGIV-QRIMDGIAQPLTIEGHEFFISSSIGVAVYPNDGVTPEEL 658 Query: 391 LRLADIAMYRAKQGGDNNEGGYVYYSEEMNRNTLDLLRIETGLLHAFEYNELLLYYQPKV 450 ++ ADIAMYRAK+ G NN + +Y+ MN L+ LR+E L +A E E +L+YQP++ Sbjct: 659 IKHADIAMYRAKETGRNN---FQFYTSSMNERALERLRLEGDLRNAMERGEFILHYQPQL 715 Query: 451 DMNTLAITGGEALVRWQHPERGLLLPGEFIPIAEETGLIVQLSDWVLDAVCRQARAWKEA 510 D+ T I G EAL+RWQHPE G++ P FI +AEETGLIV + WV+ CRQ + W+E Sbjct: 716 DLRTGKIVGVEALIRWQHPELGMIPPMRFIGLAEETGLIVPIGAWVIREACRQNKVWQEH 775 Query: 511 GLAPIRIALNVTAREFTRS-LPDRVRAALNRHALSGDWLEIEITESMLMHSTDRVISIME 569 GL +R+++N++AR+F + L + + AL L LEIE+TES++M D I I+ Sbjct: 776 GLGSLRMSVNLSARQFAQQDLLESIALALEETQLPPQCLEIELTESLVMADVDHAIGILR 835 Query: 570 KICSLGITISLDDFGTGYSSLSYLKRFPINTLKIDRSFTMGIPDDTNDCAIASAIIGIAK 629 ++ +LG+ +S+DDFGTGYSSLSYLKRFPI+ LKIDRSF I D +D AI ++II +A Sbjct: 836 ELKALGVQLSIDDFGTGYSSLSYLKRFPIDVLKIDRSFVNDITTDPDDAAIVASIISLAH 895 Query: 630 QLRHKVIAEGVETEKQFNFLREAGCNELQGFLFSCPVPADDFHAMLLEGRKLN 682 LR VIAEGVETE+Q +L++ C+++QG+ FS P+ AD ML + ++L Sbjct: 896 SLRLTVIAEGVETEEQLAYLQQHDCDQIQGYFFSRPITADAMEVMLKDDKRLQ 948 >gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 699 Score = 397 bits (1020), Expect = e-111, Method: Compositional matrix adjust. Identities = 225/571 (39%), Positives = 326/571 (57%), Gaps = 9/571 (1%) Query: 113 DSDKRSRALDQIEAKLEQQAQILNQMHESVITMDPAGFITSWNRGAEQLFGYTSLEAIGR 172 D +R +A + + + I E + P+ + N +++GY S +A+ Sbjct: 132 DVTERKQADEALREAERRYRSIFENAIEGIYQSTPSDGYLAVNPALARMYGYDSPQALIS 191 Query: 173 NVLFL----YENEEEEDAMHALFLEHGS-REIEVRRRKKSGEVFWASLSLSVMRDQNGHP 227 + + Y + + L +HG E R +++GEV W S + + + +G Sbjct: 192 TLRDIDNQVYVDPQRRLEFKRLMAKHGVVTNFESRVHRRNGEVIWISENARSVYNSDGTL 251 Query: 228 IGLIGYLNDITERKNAEKLIHHLAYYDALTGLPNRTLLTRTVDQALTAAQHENLQGCVMF 287 + G + ITERK E I A +DALTGLPNRTLL + QA+ ++ + F Sbjct: 252 LFFEGTVEAITERKLHEAEIQFQATHDALTGLPNRTLLYDRMQQAVLHSERYGKLTAIAF 311 Query: 288 IDLNRFKPINDTLGHVAGDMLLVEVAIRLRRALREQDVVARLGADEFAVALFDIDKDHHP 347 +DL++FK IND+LGH GD LL A RL LRE D VAR G DEF + L D + Sbjct: 312 LDLDQFKFINDSLGHQVGDELLKITAQRLTSCLRESDTVARQGGDEFVLLLTDQPNEEAI 371 Query: 348 GYVAQKLLSLFDEPFFIDGHELRVGASIGVSMYPEDASDTETLLRLADIAMYRAKQGGDN 407 + Q++L +P+ + E ++ SIG+++ P+D D ETLL+ AD AMY+AK+ G N Sbjct: 372 THTMQRVLHEVSQPWKANDLEFQITCSIGLTLCPDDGRDAETLLKNADSAMYKAKELGRN 431 Query: 408 NEGGYVYYSEEMNRNTLDLLRIETGLLHAFEYNELLLYYQPKVDMNTLAITGGEALVRWQ 467 N + Y+S EMN + D L + L A + +L+YQPKV + + I G EALVRW Sbjct: 432 N---FQYFSAEMNSSVTDRLELLNRLRQAITNEDFVLHYQPKVSLASHQIIGAEALVRWN 488 Query: 468 HPERGLLLPGEFIPIAEETGLIVQLSDWVLDAVCRQARAWKEAGLAPIRIALNVTAREFT 527 G++ P FIP+AEETGLI+ L +WVL CRQ RAW++AG PI I++N++ R+ Sbjct: 489 SAHSGMVSPASFIPLAEETGLIIPLGEWVLRTACRQNRAWQDAGYPPIPISVNLSPRQLA 548 Query: 528 R-SLPDRVRAALNRHALSGDWLEIEITESMLMHSTDRVISIMEKICSLGITISLDDFGTG 586 R + + V L L LE+EITES++ ++ +++ ++ SLG+ ISLDDFGTG Sbjct: 549 RGDIVEVVERILTETGLEAQHLELEITESVMTTDVEKSFALLTQLRSLGVKISLDDFGTG 608 Query: 587 YSSLSYLKRFPINTLKIDRSFTMGIPDDTNDCAIASAIIGIAKQLRHKVIAEGVETEKQF 646 YSSLSYLKRFP++TLKID+SF I D + AI AII + + L V+AEG+ETE QF Sbjct: 609 YSSLSYLKRFPVDTLKIDQSFVRDIATDQDSAAIVKAIISLGRNLNLTVLAEGIETEDQF 668 Query: 647 NFLREAGCNELQGFLFSCPVPADDFHAMLLE 677 FL GC+E QG+L S PVP +F +L + Sbjct: 669 QFLLANGCDEGQGYLMSKPVPNKNFVDLLTQ 699 >gi|152981462|ref|YP_001353834.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 709 Score = 367 bits (943), Expect = e-102, Method: Compositional matrix adjust. Identities = 193/436 (44%), Positives = 274/436 (62%), Gaps = 7/436 (1%) Query: 251 AYYDALTGLPNRTLLTRTVDQALTAAQHENLQGCVMFIDLNRFKPINDTLGHVAGDMLLV 310 A D LT LPNRTLL +DQ + A E + +MFIDL+ FK IND+LGH GD+LL+ Sbjct: 263 ALQDNLTKLPNRTLLEDRLDQMVHKAVREQSRFALMFIDLDGFKAINDSLGHHIGDLLLI 322 Query: 311 EVAIRLRRALREQDVVARLGADEFAVALFDIDKDHHPGYVAQKLLSLFDEPFFIDGHELR 370 +VA R+R +R QD ARLG DEF V L ++++ VA KL + ++PF I + L Sbjct: 323 DVAKRIRDNIRAQDTAARLGGDEF-VMLIEVNEPEDAASVADKLCTTLNQPFDIAQYNLG 381 Query: 371 VGASIGVSMYPEDASDTETLLRLADIAMYRAKQGGDNNEGGYVYYSEEMNRNTLDLLRIE 430 + ASIG+++YPED S LL AD AMY K G N GY ++ MN N + L++ Sbjct: 382 ISASIGIAVYPEDGSTRHDLLIHADAAMYHTKSTGRN---GYHFFEASMNINAHNQLQVI 438 Query: 431 TGLLHAFEYNELLLYYQPKVDMNTLAITGGEALVRWQHPERGLLLPGEFIPIAEETGLIV 490 L A E E L+YQPK + + G EAL+RWQHP RG++ P +FI +AE+TGLIV Sbjct: 439 QDLRTALERKEFRLHYQPKFNTTDGVVVGAEALLRWQHPIRGIVAPADFISLAEKTGLIV 498 Query: 491 QLSDWVLDAVCRQARAWKEAGLAPIRIALNVTAREFTR-SLPDRVRAALNRHALSGDWLE 549 + +WVLD CRQ R W + G +IA+N+++ +F+ +L + V+ L R+ L L Sbjct: 499 PIGEWVLDEACRQMRKWYDEGYQQWKIAVNLSSVQFSNDNLVEMVKETLARNNLPATCLM 558 Query: 550 IEITESMLMHSTDRVISIMEKICSLGITISLDDFGTGYSSLSYLKRFPINTLKIDRSFTM 609 +E+TES MH+ + ++I+E++ SLG+ IS+DDFGTGYSSL YLKR P LKIDR F Sbjct: 559 LEVTESTAMHNVEASLTILEQLVSLGVEISIDDFGTGYSSLLYLKRLPATELKIDRGFIR 618 Query: 610 GIPDDTNDCAIASAIIGIAKQLRHKVIAEGVETEKQFNFLREAGCNELQGFLFSCPVPAD 669 + ++D +I SAI+ + + L +++AEGVETEKQ +L GC+ LQG+ P+ ++ Sbjct: 619 DLAHGSDDASIVSAIVALGRSLNLRIVAEGVETEKQQEYLTTLGCDTLQGYFMGHPMASE 678 Query: 670 DFHAML--LEGRKLNL 683 F A + L+ +LNL Sbjct: 679 QFMAAINALKAVQLNL 694 >gi|152983039|ref|YP_001352601.1| sensory box protein [Janthinobacterium sp. Marseille] Length = 914 Score = 342 bits (877), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 192/453 (42%), Positives = 277/453 (61%), Gaps = 14/453 (3%) Query: 229 GLIGYLNDITERKNAEKLIHHLAYYDALTGLPNRTLLTRTVDQALTAAQHENLQGCVMFI 288 GL D+++RK E+ +H LA D LT LPNR L + +AL A + V+FI Sbjct: 460 GLAVTFRDVSDRKAHEEELHRLATKDTLTNLPNRYWLMNHLPKALNEANEKQDSLAVLFI 519 Query: 289 DLNRFKPINDTLGHVAGDMLLVEVAIRLRRALREQDVVARLGADEFAVALFDIDKDHHPG 348 DL+ FK INDTLGH +GD LL VA RL LR D V RLG DEF + L + Sbjct: 520 DLDDFKNINDTLGHSSGDSLLQVVASRLESVLRPGDSVVRLGGDEFTLLLESLPLQEDIS 579 Query: 349 YVAQKLLSLFDEPFFIDGHELRVGASIGVSMYPEDASDTETLLRLADIAMYRAKQGGDNN 408 +A +++ F++PF I L + AS+G+S YP D D ETLL+ ADIAMY AK G N Sbjct: 580 LIANRIMQTFNQPFEIQQKMLTISASMGISRYPFDGRDAETLLKNADIAMYSAKADGKNK 639 Query: 409 EGGY---VYYSEEMNRNTLDLLRI--ETGLLHAFEYNELLLYYQPKVDMNTLAITGGEAL 463 Y +Y EE+ LR+ E L A + + ++YYQP+V+ T + G EAL Sbjct: 640 VRVYDKKLY--EEIE------LRVDGERQLARAIQEDHFIVYYQPRVEAQTGRMVGMEAL 691 Query: 464 VRWQHPERGLLLPGEFIPIAEETGLIVQLSDWVLDAVCRQARAWKEAGLAPIRIALNVTA 523 VRW HPERGL+ P FIP+AE TG+I+ L V++ V Q AW+ LA + +++NV+A Sbjct: 692 VRWAHPERGLIAPDHFIPLAESTGMILPLGRLVMEKVFCQIAAWQFQKLAVVPVSVNVSA 751 Query: 524 REFTR-SLPDRVRAALNRHALSGDWLEIEITESMLMHSTDRVISIMEKICSLGITISLDD 582 R+F ++ + + + LN++A+ ++EIE+TES +M + ++V + I +LGI I +DD Sbjct: 752 RQFDEGNVSEFIASCLNKYAVDPRFIEIELTESAMMGNFEQVRGEISSISALGIQIHVDD 811 Query: 583 FGTGYSSLSYLKRFPINTLKIDRSFTMGIPDDTNDCAIASAIIGIAKQLRHKVIAEGVET 642 FGTGYSSLS L +F ++ LK+DR+FT I + S+I+ +AK L+ +V+AEGVET Sbjct: 812 FGTGYSSLSLLYKFNMDVLKVDRAFTSQICNGKGGEIFFSSIVSMAKVLKMRVVAEGVET 871 Query: 643 EKQFNFLREAGCNELQGFLFSCPVPADDFHAML 675 +Q L++ GC+E+QG+L S P+P+ D +L Sbjct: 872 IEQLRVLQQLGCDEIQGYLVSKPIPSSDVPRLL 904 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,675,484 Number of extensions: 72071 Number of successful extensions: 295 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 240 Number of HSP's successfully gapped: 34 Length of query: 697 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 607 Effective length of database: 888,291 Effective search space: 539192637 Effective search space used: 539192637 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)