BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1989.p
         (399 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981229|ref|YP_001353014.1| signal transduction protein [Ja...   134   7e-33
gi|152980233|ref|YP_001353778.1| signal transduction protein [Ja...   129   2e-31

>gi|152981229|ref|YP_001353014.1| signal transduction protein
           [Janthinobacterium sp. Marseille]
          Length = 425

 Score =  134 bits (338), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 166/353 (47%), Gaps = 15/353 (4%)

Query: 54  DALGGLNCIIPVRDPAIFAPEFAQEIPQGQLALRVPVEHCVDPAKIDALDWLYSRGFAII 113
           ++LG  N      D A+   +F   +P  ++ L +     +    ++ +  L ++GF   
Sbjct: 75  NSLGFFNV-----DAAVLMCDFVNFLPSDKVVLEILETVEITHELVERVSELVAQGFTFA 129

Query: 114 ADGLPAQG---ASVFPFVESMALDVSMGHVPETTQWLHRLRGPH---LAENVGDAVQFDA 167
            D + +       + P ++ + +D++     E  +     R      LAE V    QF+A
Sbjct: 130 LDDVISHSDALKDLLPLIKIIKIDITGMSTTELGKLADHFRLEDKLLLAEKVETQEQFEA 189

Query: 168 CRVEGFRWFSGDYALHPDSRLSQKNSISRARLLKLLELVARDADANALESLLKQDPALSY 227
           C   GF +F G Y   P     +K + S+  +++L+ L+  DAD   +E  +K+D +L  
Sbjct: 190 CMKLGFHYFQGYYFARPVILSGKKLAPSQLAIMQLMALIMADADTAEIERNIKKDASLVL 249

Query: 228 QLFKLVSSAAFGFSAHITNFTQAINLLGRRQLQRWLQLLLYARF-PGDESANPLLPRAAA 286
            L +L ++   G +  I +  QA+ +LGRRQLQRWLQ++LYA    G    +PLL  A  
Sbjct: 250 TLLRLANTPGVGVTQRIDSLGQALTVLGRRQLQRWLQIILYAEHNKGSHFTSPLLQLATT 309

Query: 287 RAAMMEAMAHKVQCTQEEL-DRAFITGMFSLLDILLGMPLHDIIEPLKLPVDIVNALVRR 345
           R  ++E +  K++     + D AF  G+ SL+D L    + +I++ + +  ++ +AL+ R
Sbjct: 310 RGKLLELITEKLRPDNRSMADTAFTVGIMSLMDTLFSQSMEEILDQVSVVEEVTDALLYR 369

Query: 346 TGRLGKLLDVVERSE--DGRIPLRHSDLDAAGLDAQVYCRCLIQAFNWATRVS 396
            G  G LL + E  E  +    L    L    L  +      + AF W+  VS
Sbjct: 370 KGFYGDLLKLAEYIEQIEKTGALLIPTLQKLQLSIEDLYALQLAAFEWSNNVS 422


>gi|152980233|ref|YP_001353778.1| signal transduction protein
           [Janthinobacterium sp. Marseille]
          Length = 395

 Score =  129 bits (325), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 143/305 (46%), Gaps = 12/305 (3%)

Query: 68  PAIFAPEFAQEIPQGQLALRVPVEHCVDPAKIDALDWLYSRGFAIIADGLPAQGAS---- 123
           PA+ A +  +++P     LR+      D     A   L   G+ I   G  A  A     
Sbjct: 65  PALLAADVVRQLPAKNSVLRLTAADLGDEETRKAAVALRQHGYGISLRGADALAAGNPLL 124

Query: 124 -VFPFVESMALDVSMGHVPETTQWLHRLRGPHLAENVGDAVQFDACRVEGFRWFSGDYAL 182
            V   VE        G  P        ++G      V     +DAC  +G   F G+  L
Sbjct: 125 QVVSHVEGRYNREQGGATPVAALQSSTVKGA--VRKVSAWQDYDACAAQGLHAFIGNLYL 182

Query: 183 HPDSRLSQKN-SISRARLLKLLELVARDADANALESLLKQDPALSYQLFKLVSSAAFGFS 241
            P +   +K  + ++  +++L+E++ ++AD   LE +LK+D ALSY+LF+ ++S  FG  
Sbjct: 183 TPRANAEKKGWNSAQVIIVQLMEMLRQNADIRELEEVLKRDAALSYKLFRYINSVGFGLG 242

Query: 242 AHITNFTQAINLLGRRQLQRWLQLLLYARFPGDESANPLLPRAAARAAMMEAMAHKVQCT 301
           A I +   A+ +LG  QL RWL LLL A    D  A  L+  A  R    E   H +   
Sbjct: 243 AEIQSLRHAVTMLGYSQLYRWLSLLL-ATASTDSHAAVLMQTAIVRGRFAELAGHGI-LP 300

Query: 302 QEELDRAFITGMFSLLDILLGMPLHDIIEPLKLPVDIVNALVRRTGRLGKLLDVVERSE- 360
           + E +  F+ GMFSLLD LLGMP+ +++  ++L   +  AL+ R G  G  L + E  E 
Sbjct: 301 KNEAENLFVVGMFSLLDRLLGMPMEEVLAKIQLAEPMAQALLTRDGMYGPFLALAEACEL 360

Query: 361 -DGRI 364
            +G I
Sbjct: 361 NNGNI 365


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 884,185
Number of extensions: 35314
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 2
Length of query: 399
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 314
Effective length of database: 906,776
Effective search space: 284727664
Effective search space used: 284727664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)