BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1988.p
         (417 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980187|ref|YP_001353024.1| coproporphyrinogen III oxidase ...   674   0.0  
gi|152980463|ref|YP_001353317.1| oxygen-independent coproporphyr...   119   3e-28

>gi|152980187|ref|YP_001353024.1| coproporphyrinogen III oxidase
           [Janthinobacterium sp. Marseille]
          Length = 414

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/416 (75%), Positives = 367/416 (88%), Gaps = 3/416 (0%)

Query: 1   MIPIKPINPAMAELPATQAATGPAQAALAFLKPGSLQLAALPPLSLYVHFPWCVRKCPYC 60
           MIPIKPI+ ++A+       +GPA+ A A+LKPG+L L ALPPLSLYVHFPWCV+KCPYC
Sbjct: 1   MIPIKPISNSIAD---ALDHSGPARVATAYLKPGALSLTALPPLSLYVHFPWCVKKCPYC 57

Query: 61  DFNSHEVKGSFPEDDYLAALRSDLEQSLPLIWGRKIHTIFIGGGTPSLLSAAGLDRLLSD 120
           DFNSHE  G FPED+YL+ALR+DLE +LPLIWGRKI+TIFIGGGTPSLLSAAGLDRLLSD
Sbjct: 58  DFNSHEATGGFPEDEYLSALRADLEMALPLIWGRKIYTIFIGGGTPSLLSAAGLDRLLSD 117

Query: 121 LRTLLPFDSDIEITMEANPGTFEADKFRSYRASGINRLSIGIQSFNSQHLHALGRIHDGD 180
           +RTLLP D  +EITMEANPGTFEA+KF+SYRASGINRLSIGIQSFNS+HL ALGRIH+GD
Sbjct: 118 IRTLLPLDGAVEITMEANPGTFEAEKFKSYRASGINRLSIGIQSFNSRHLDALGRIHNGD 177

Query: 181 QARKAVEIAHANFDNFNLDLMYALPQQTLAEAQADISTAIAFAPPHLSLYHLTLEPNTLF 240
           +A++AV+IA +NFDNFNLDLMYALP QTL EA+ D+ TAIA+APPHLSLYHLT+EPNT+F
Sbjct: 178 EAQRAVDIAASNFDNFNLDLMYALPSQTLDEARLDVQTAIAYAPPHLSLYHLTMEPNTVF 237

Query: 241 AKYPPPVPDEDASADMQDMIAELTTAAGYTNYEVSAYAQPKRRARHNLNYWQFGDYLGIG 300
           AKYPP VPD+DASADMQDMI + T AAGY +YEVSAYAQPKR+ARHNLNYWQFGDYLGIG
Sbjct: 238 AKYPPVVPDDDASADMQDMIEQETGAAGYQHYEVSAYAQPKRQARHNLNYWQFGDYLGIG 297

Query: 301 AGAHSKLSFPHRIVRQMRYKHPQAYLDQARVGSPIQEEGEIGRDALGFEFMLNALRLTEG 360
           AGAH+KLSFPHR++RQ RYK P++Y++Q R+G+PIQEE EI R  LGFEFMLNA+RL EG
Sbjct: 298 AGAHTKLSFPHRVIRQARYKQPKSYMEQMRLGNPIQEEKEITRSELGFEFMLNAMRLVEG 357

Query: 361 FPPNLFAERTGMSLNQIEQQLNLAEQKGMLYRDHALIRPTELGRRFLNDLQEIFLS 416
              N+FAERTGM LN +E+ LN AE KG+LYRDH  I+PT LG+RFLNDLQE+FL+
Sbjct: 358 VEVNMFAERTGMPLNAVERALNEAEAKGLLYRDHKTIKPTVLGQRFLNDLQEMFLA 413


>gi|152980463|ref|YP_001353317.1| oxygen-independent
           coproporphyrinogen III oxidase [Janthinobacterium sp.
           Marseille]
          Length = 487

 Score =  119 bits (298), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 136/281 (48%), Gaps = 18/281 (6%)

Query: 34  GSLQLAALPPLSLYVHFPWCVRKCPYCDFNSHEVKGSFPEDDYLAALRSDLEQSLPLIWG 93
           G+     + PLSLY+H P+C   C YC  N    K      +YL  L+ ++E    L+ G
Sbjct: 61  GATARGNMHPLSLYIHIPFCESICYYCGCNKIVTKDRSKAANYLVYLKREIEMQGKLLAG 120

Query: 94  -RKIHTIFIGGGTPSLLSAAGLDRLLSDLRTLLPF--DSDIEITMEANPGTFEADKFRSY 150
             ++  +  GGGTP+ L+ A +  L+  LR    F  D++ E ++E +P T   ++    
Sbjct: 121 SNQVEQLHFGGGTPTYLTDAQMGELMLHLRRWFSFAPDAEGEYSIEVDPRTVTPERVHGL 180

Query: 151 RASGINRLSIGIQSFNSQHLHALGRIHDGDQARKAVEIAH-ANFDNFNLDLMYALPQQTL 209
           R  G NR+S+G+Q F+++   A+ RI    +    ++ A  A F + ++DL+Y LP+Q L
Sbjct: 181 RRQGFNRISLGVQDFDAEVQKAVNRIQPESETVAIMDAARAAGFRSVSIDLIYGLPKQNL 240

Query: 210 AEAQADISTAIAFAPPHLSLYHLT-----LEPNTLFAKYPPPVPDEDASADMQDMIAELT 264
              +  +   IA  P  +++Y+        +P    A+    +PD +   +M  +  +  
Sbjct: 241 HTMEQTLEKVIAANPDRIAIYNYAHMPHLFKPQRRIAE--ADLPDGETKLEMLALCIQRL 298

Query: 265 TAAGYTNYEVSAYAQP-------KRRARHNLNYWQFGDYLG 298
             AGY    +  +A+P       +R+ R + N+  +  ++G
Sbjct: 299 NDAGYIYIGMDHFAKPGDDLAIAQRQGRLHRNFQGYSTHVG 339


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 901,695
Number of extensions: 35908
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 2
Length of query: 417
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 331
Effective length of database: 903,079
Effective search space: 298919149
Effective search space used: 298919149
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)