BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1986.p
         (242 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979839|ref|YP_001353022.1| ribonuclease PH [Janthinobacter...   404   e-114

>gi|152979839|ref|YP_001353022.1| ribonuclease PH [Janthinobacterium
           sp. Marseille]
          Length = 244

 Score =  404 bits (1037), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 192/242 (79%), Positives = 217/242 (89%)

Query: 1   MTTFHRPSGRSVSQLREVRLTRQYTKHAEGSVLVEFGDTRVLCTASIEEKVPGFLKGKGQ 60
           M+  +RPSGR+   LR ++LTR YTKHAEGSVL+E GDT+V+CTASIE++VPGFLKGKGQ
Sbjct: 1   MSYENRPSGRAADALRAIKLTRNYTKHAEGSVLIECGDTKVICTASIEDRVPGFLKGKGQ 60

Query: 61  GWLTAEYGMLPRSTHTRMDREAAKGKQSGRTQEIQRLIGRALRAAFDLEAFGERTLQLDC 120
           GWLTAEYGMLPRSTHTRMDREAA+GKQSGRTQEIQRLIGR+LRAAFDL+AFGERTL LDC
Sbjct: 61  GWLTAEYGMLPRSTHTRMDREAARGKQSGRTQEIQRLIGRSLRAAFDLQAFGERTLHLDC 120

Query: 121 DVLQADGGTRTAAITGAMVAAYDAFTVLQSRGLIETIPVKQFVAAISVGVYQGVPVLDLD 180
           DV+QADGGTRTAAITG MVAAYDAF+ L ++ +I  IP+K FVAAISVGVY+G PVLDLD
Sbjct: 121 DVIQADGGTRTAAITGTMVAAYDAFSKLVAQNVIPAIPLKHFVAAISVGVYKGQPVLDLD 180

Query: 181 YLEDSDCDTDMNVVMTDAGHFVEVQGTAEGAAFDRATLNSLLDLAQQGIATLNGLQKQAL 240
           Y EDSDCDTDMN+VMTDAGHF+EVQGTAEGAAFDRAT++ LLDLAQ GI  L  LQKQAL
Sbjct: 181 YDEDSDCDTDMNIVMTDAGHFIEVQGTAEGAAFDRATMDKLLDLAQDGIRDLIVLQKQAL 240

Query: 241 GL 242
            +
Sbjct: 241 AI 242


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 546,307
Number of extensions: 22256
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 161
Effective length of database: 921,564
Effective search space: 148371804
Effective search space used: 148371804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)