BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1985.p
         (304 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981178|ref|YP_001353019.1| hypothetical protein mma_1329 [...   470   e-134

>gi|152981178|ref|YP_001353019.1| hypothetical protein mma_1329
           [Janthinobacterium sp. Marseille]
          Length = 305

 Score =  470 bits (1210), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 228/305 (74%), Positives = 270/305 (88%), Gaps = 1/305 (0%)

Query: 1   LTIYSMTGYAVTTRETTAGTVTLEMKSVNSRFLDLQFRVNDDLRAVEPMLREAIMGRLVR 60
           +TI SMTGYAVTT ET++GT+T+E+KSVNSRFLDLQFR+NDDLRA+EP+LREAIM R+ R
Sbjct: 1   MTICSMTGYAVTTHETSSGTLTIEVKSVNSRFLDLQFRINDDLRALEPVLREAIMARITR 60

Query: 61  GKVECRLSFGRKVASGNSQAINTSLVAQLASLQDQLRAQFPDAAPLSINELLRWPGVMEE 120
           GKVECRLSFGRKVA G +QA+N+S +  LA+LQ ++R  F DAA LS+NELLRWPGV+EE
Sbjct: 61  GKVECRLSFGRKVAGGTTQALNSSALDTLATLQAEIRRHFADAAQLSVNELLRWPGVIEE 120

Query: 121 AEISQETLQADILSTLQQTLDAFVESRAREGSALQAVILARVDAMEAIVARITPLVPQLV 180
           AE+SQETLQAD+ + +Q T++AFV+SR REG+ALQ ++L+RVD MEAIV RITPL+PQ+V
Sbjct: 121 AEMSQETLQADVAAAMQTTMNAFVDSREREGNALQTMLLSRVDDMEAIVLRITPLIPQVV 180

Query: 181 EQFQQKAIERMTEALGLALQTQNGAAPVA-TREESLERIRQEVTLYGIRIDIAEELARLS 239
            QFQQKA ERM EALGLA    +GAA  + TREE+L+RIRQEVTLYGIR+D+AEEL RL 
Sbjct: 181 AQFQQKATERMQEALGLAAGNGSGAAQASVTREEALDRIRQEVTLYGIRVDVAEELTRLG 240

Query: 240 AHLAETRHILKKGGQVGKRLDFMMQELNREANTVGSKAAVKELADASMELKLLIDQMREQ 299
           AHL+ETR ILKKGGQVGKRLDFMMQELNREANTVGSKAAVKEL+DASM +KLLI+QMREQ
Sbjct: 241 AHLSETRAILKKGGQVGKRLDFMMQELNREANTVGSKAAVKELSDASMAMKLLIEQMREQ 300

Query: 300 VQNLE 304
           VQNLE
Sbjct: 301 VQNLE 305


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.130    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 544,841
Number of extensions: 19593
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 221
Effective length of database: 914,170
Effective search space: 202031570
Effective search space used: 202031570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)