BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1984.p
         (212 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979796|ref|YP_001353018.1| guanylate kinase [Janthinobacte...   357   e-100

>gi|152979796|ref|YP_001353018.1| guanylate kinase
           [Janthinobacterium sp. Marseille]
          Length = 214

 Score =  357 bits (916), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/212 (81%), Positives = 189/212 (89%)

Query: 1   MPVQKPTSGSLFMVVAPSGAGKSTLVNALLKQEPSIKLSISYTTRAPRPGEEHGREYYFT 60
           M  Q  +SGSLF+VVAPSGAGKS+LVNALL+QEPSIKLSISYTTR PRPGE+HGREY+FT
Sbjct: 1   MSEQAHSSGSLFLVVAPSGAGKSSLVNALLQQEPSIKLSISYTTRPPRPGEQHGREYFFT 60

Query: 61  DVDDFLKRQAEGEFLEWAEVHGNYYGTSRLMIADQIANGTDVLLEIDWQGAQQVKKQFTN 120
            VDDFL R+   EFLE AEV GNYYGTSR+ IADQ+A GTDVLLEIDWQGAQQVKKQF +
Sbjct: 61  SVDDFLARRQSNEFLESAEVFGNYYGTSRIQIADQMAAGTDVLLEIDWQGAQQVKKQFPH 120

Query: 121 AIGIFILPPSIAALEERLKKRGQDEPHVITRRILAAGGEIAHSPEFEYVIINQEFAVALS 180
           A+GIFILPPSIAALEERLKKRGQDE HVITRRILAAGGEIAH+ EFEYVIINQEF VAL+
Sbjct: 121 AVGIFILPPSIAALEERLKKRGQDEDHVITRRILAAGGEIAHASEFEYVIINQEFTVALA 180

Query: 181 ELTAIVQAARCRFPQQAARNAYLFTQLGIHAS 212
           EL+AIV+A RCRF QQ+ RNA LF QLGIHA+
Sbjct: 181 ELSAIVKATRCRFAQQSTRNASLFAQLGIHAN 212


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 497,744
Number of extensions: 20065
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 133
Effective length of database: 928,958
Effective search space: 123551414
Effective search space used: 123551414
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)