BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1982.p (754 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979858|ref|YP_001353016.1| guanosine-3',5'-bis(diphosphate... 1200 0.0 gi|152980252|ref|YP_001353176.1| GTP pyrophosphokinase [Janthino... 356 3e-99 >gi|152979858|ref|YP_001353016.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [Janthinobacterium sp. Marseille] Length = 758 Score = 1200 bits (3105), Expect = 0.0, Method: Compositional matrix adjust. Identities = 581/760 (76%), Positives = 652/760 (85%), Gaps = 8/760 (1%) Query: 1 MSLTTTDSTLSAAASSKRAAGSGRTATPQEVAPAAAH----SGVATFAHLIPKLEEYLTP 56 M+LT TDST S A S+ RA PQ+ +A+ +GVA+ L KL EYLTP Sbjct: 1 MNLTPTDSTASIA-STNRAVPDRSAKMPQKKTASASTPAPVAGVASVTQLTTKLAEYLTP 59 Query: 57 SELKKVKEAYRFADEMHLGQMRKSGEPYISHPLAVAEICAEWKLDAQAMMAAFLHDVMED 116 SELKKVKEAYRF+DE HLGQMR SGEPYISHP+AVAEICA+WKLDAQA+MAA LHDVMED Sbjct: 60 SELKKVKEAYRFSDEAHLGQMRMSGEPYISHPIAVAEICADWKLDAQAIMAALLHDVMED 119 Query: 117 QGVKKEELIERFGASVASLVDGLSKLDKIEFQSQVEAQAENFRKMLLAMARDVRVILVKL 176 Q V+K+ELIERFGA VA+LVDGLSKL+KIEFQSQVEAQAENFRKMLLAMARDVRVILVKL Sbjct: 120 QDVRKDELIERFGAPVANLVDGLSKLEKIEFQSQVEAQAENFRKMLLAMARDVRVILVKL 179 Query: 177 ADRLHNMRTLGSMPPEKKRRISRETMEVYVPIAHRLGLNNIYRELQELSFSHLYPLRHRT 236 ADRLHNMRTLGSM P KKRRI+RETMEVYVPIAHRLGLNNIYRELQ+L+FSHLYP+R++T Sbjct: 180 ADRLHNMRTLGSMAPAKKRRIARETMEVYVPIAHRLGLNNIYRELQDLAFSHLYPMRYKT 239 Query: 237 LSKAVKAARGNRREVVTKIMESVTSTLIAAGIPAQVDGREKTLYGIYRKMRNKHLSFSQV 296 L+KAVKAARGNRREVV+KI+ESV +TL A GIPAQV GREKTLYGIY KM NK LSFSQV Sbjct: 240 LAKAVKAARGNRREVVSKILESVNNTLDATGIPAQVYGREKTLYGIYTKMLNKRLSFSQV 299 Query: 297 LDVYGFRVVVDSFANCYVALGTLHSLFKPMPGKFKDYIAIPKLNGYQSLHTTLIGPYGTP 356 LD+YGFRVVVDSFANCYVALGTLH+LFKPMPGKFKDYIAIPKLNGYQSLHTTLIGPYGTP Sbjct: 300 LDIYGFRVVVDSFANCYVALGTLHALFKPMPGKFKDYIAIPKLNGYQSLHTTLIGPYGTP 359 Query: 357 VEFQIRTTEMHRVAESGVAAHWLYKDDEGSLTDLQQRTHAWLQSLLDIQKQTGDSAEFLE 416 +EFQIRT +MHRVAESGVAAHWLYKDDEGSL+DLQQRTHAWLQSLLDIQKQTGDSAEFLE Sbjct: 360 IEFQIRTQDMHRVAESGVAAHWLYKDDEGSLSDLQQRTHAWLQSLLDIQKQTGDSAEFLE 419 Query: 417 HVKVDLFPDSVYVFTPKSKIIALPRGATALDFAYSIHTDIGDQTTSVIINHEPAPLRSEL 476 HVKVDLFPDSVYVFTPKSKIIALPRGATALDFAY+IHTDIGDQT +V IN E PLR+EL Sbjct: 420 HVKVDLFPDSVYVFTPKSKIIALPRGATALDFAYTIHTDIGDQTIAVKINLEQVPLRTEL 479 Query: 477 HNGDIVEIITSPTSRPSPNWLGYVRTGKARSAIRHRLRTANRVESQTVGRRLLGNALHTL 536 NGDIVEIITSP+SRP+PNWLG+VRTGKARSAIRH LRT N ES +GRRLL AL TL Sbjct: 480 RNGDIVEIITSPSSRPNPNWLGFVRTGKARSAIRHHLRTINLTESIELGRRLLSQALVTL 539 Query: 537 GIEPELPSHIVERLLNESSAKTMDDLYAEIGIGTRMAPLVARHIMTMM--DTGVSVPQLD 594 ++PELP+ + ERLLNESSAK++DDLYA+IG+G RMA LVARHI+ M+ D V PQ+D Sbjct: 540 NLDPELPAPVAERLLNESSAKSLDDLYADIGVGKRMAALVARHILGMVENDQLVPRPQID 599 Query: 595 PEGHMLPNKPDPVVITGSEGASAQLSSCCMPIPGDRLTGYLKPDQTLIVHTQECETAKRL 654 G +LP K DPVVI GSEG S QL+SCC PIPGD + G +K DQ L +HT +CE A+R Sbjct: 600 ANGEVLPKKIDPVVIYGSEGVSVQLASCCQPIPGDAIIGQMKRDQGLTIHTHDCEVARRQ 659 Query: 655 HEKEPDRWIELVWGHDLNRRFDCRITILIHNERGTLARIAAEIGESDANIVSVAMDDEGG 714 H KEPDRWI++VWG D++RRFDC IT+L NE+G LAR+AAEIGESD+NI V M DE Sbjct: 660 HSKEPDRWIDVVWGSDIDRRFDCSITLLARNEKGILARVAAEIGESDSNITHVGM-DEDK 718 Query: 715 NASMKYLRFTIQIEDRVHLARLMRGIRKIDSVARILRERG 754 + + YL FT+Q+EDRVHLARLMR +R I V R+LR++G Sbjct: 719 DHMITYLHFTVQVEDRVHLARLMRNLRSIPGVTRLLRDKG 758 >gi|152980252|ref|YP_001353176.1| GTP pyrophosphokinase [Janthinobacterium sp. Marseille] Length = 759 Score = 356 bits (913), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 227/747 (30%), Positives = 377/747 (50%), Gaps = 58/747 (7%) Query: 50 LEEYLTPSELKKVKEAYRFADEMHLGQMRKSGEP-------YISHPLAVAEICAEWKLDA 102 L LT + +V +A F ++ G+ +G+ VA + ++ + DA Sbjct: 15 LRSGLTEHDSARVMDALAFVKPIYSGKKVSAGQDAFESEQDTFEFAQGVATVLSQLETDA 74 Query: 103 QAMMAAFLHDVMEDQGVKKEELIERFGASVASLVDG---LSKLDKIEFQSQVEAQAEN-- 157 +AA L ++ +++ ERFG V +LV G L +L ++ F A+++N Sbjct: 75 DTRIAALLFELATIDPTAADKIEERFGKEVNNLVLGVRQLMRLHEVTFVQHEAARSKNAA 134 Query: 158 ---------FRKMLLAMARDVRVILVKLADRLHNMRTLGS--MPPEKKRRISRETMEVYV 206 RKMLLAMA D+RV+LV+L R+ +R + E+ ++ +RET ++Y Sbjct: 135 QEAAAQLEVVRKMLLAMASDMRVVLVRLGTRVTTLRYFADNKVQNERSKQYARETFDLYA 194 Query: 207 PIAHRLGLNNIYRELQELSFSHLYPLRHRTLSKAVKAARGNRREVVTKIMESVTSTLIAA 266 P+A+RLG+ + EL++LSF L P ++ ++ ++ R R V ++ + S + AA Sbjct: 195 PLANRLGVWQLKWELEDLSFRFLQPEAYKRIASQLEEKRVEREAFVENAIKRLQSEMAAA 254 Query: 267 GIPAQVDGREKTLYGIYRKMRNKHLSFSQVLDVYGFRVVVDSFANCYVALGTLHSLFKPM 326 GI A+V GR K ++ I+ K+R K + FS + DV FRV+VD CY LG +H+++ P+ Sbjct: 255 GIKAEVFGRPKHIFSIWSKLRGKAIEFSDLYDVRAFRVIVDDVKTCYTVLGIIHNIWAPI 314 Query: 327 PGKFKDYIAIPKLNGYQSLHTTLIGPYGTPVEFQIRTTEMHRVAESGVAAHWLYKDDEGS 386 P +F DYI+ PK NGYQSLHT +I G P+E Q+RT +MH AE GVAAHW YK+ GS Sbjct: 315 PEEFDDYISRPKSNGYQSLHTIVIAEDGRPLEVQVRTNDMHDFAEYGVAAHWRYKEAGGS 374 Query: 387 LTDLQQRTH--AWLQSLLDIQKQTGDSA--------EFLEHVKVDLFPDSVYVFTPKSKI 436 Q+ AWL+ LL + + D+ +++E +K D +YV TP++++ Sbjct: 375 NFSGQKYDEKIAWLRQLLAWKSEVVDTVVGQEEVHRDWVEKLKSATLDDRIYVLTPQARV 434 Query: 437 IALPRGATALDFAYSIHTDIGDQTTSVIINHEPAPLRSELHNGDIVEIITSP-------T 489 I LP GAT +DFAY +H+D+G + ++ PL + L NG V+IIT+ T Sbjct: 435 IELPNGATPIDFAYHLHSDVGHRCRGARVDGVLVPLNTVLKNGQTVDIITAKGVSTVTGT 494 Query: 490 SRPSPNWL--GYVRTGKARSAIRHRLRTANRVESQTVGRRLLGNALHTLGIEPELPSHIV 547 PS +WL GY + + R+ +R ++ E+ + GR L+ L G + + Sbjct: 495 VGPSRDWLSPGYAVSSRTRAKVRAWFNAIDQQETLSHGRGLVEKTLQREG----KTAVNL 550 Query: 548 ERLLNESSAKTMDDLYAEIGIGTRMAPLVARHI-------MTMMDTGVSVPQLDPEGHML 600 E L ++ +DDL+ +G V + +T D V +P+ ++ Sbjct: 551 EELAHKLGFSKVDDLFLAVGKDEFSLRTVEHALHGDDPNAVTESDDAV-IPRKSRASSVV 609 Query: 601 PNKPDPVVITGSEGASAQLSSCCMPIPGDRLTGYLKPDQTLIVHTQECETAKRLHEKEPD 660 V++ G++G QL+ CC P P D + G++ + + +H +C+ + K P+ Sbjct: 610 HGAKSGVLVVGTDGLMTQLAKCCKPAPPDEIVGFITRGKGVSIHRADCKNFVEMRTKAPE 669 Query: 661 RWIELVWGH-DLNRRFDCRITILIHNERGTLARIAAEIGESDANIVSVAMDDEGGNASMK 719 R I+ WG + + I +L + +G L I+ N++ V+ G A M Sbjct: 670 RVIQTAWGRPESATVYPVDIFVLAGDRQGLLRDISDIFLREKINVIGVSTQSVKGQARMA 729 Query: 720 YLRFTIQIEDRVHLARLMRGIRKIDSV 746 FT +I L + + IR++ V Sbjct: 730 ---FTAEIASTAQLQKALNVIREVSGV 753 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,668,526 Number of extensions: 69719 Number of successful extensions: 215 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 210 Number of HSP's successfully gapped: 2 Length of query: 754 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 664 Effective length of database: 888,291 Effective search space: 589825224 Effective search space used: 589825224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)