BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1981.p (323 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981625|ref|YP_001354995.1| LysR family transcriptional reg... 183 1e-47 gi|152983120|ref|YP_001354504.1| LysR family transcriptional reg... 177 7e-46 gi|152980836|ref|YP_001354012.1| LysR family transcriptional reg... 173 1e-44 gi|152980915|ref|YP_001353545.1| LysR family transcriptional reg... 167 7e-43 gi|152982683|ref|YP_001354316.1| LysR family transcriptional reg... 162 4e-41 >gi|152981625|ref|YP_001354995.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 183 bits (464), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 108/296 (36%), Positives = 158/296 (53%), Gaps = 3/296 (1%) Query: 1 MLDLNDIWLFVHVVRAGSFAAAGRRLSMPPNTISRRLQSLEAAMGVRLLQRSTRQLNMTA 60 M DLND++ FV VV G FA AGR L +P + +SRR+ LE +GVRL+QR+TRQ ++T Sbjct: 1 MQDLNDLYFFVQVVDHGGFAPAGRALGIPKSKLSRRIALLEERLGVRLIQRTTRQFSVTE 60 Query: 61 AGREFFERCAPGLEDIEHASTSLTESQGEPAGSLRVAAPVDFFDNFSIEWMHEFMRLYPK 120 G+ ++E C L + E A + ++ EP G +R++ P+ + +FM L+P Sbjct: 61 IGQTYYEHCKAMLVEAEAAQDVIDVTRAEPRGVVRLSCPITLLHAHVSSMLADFMALHPH 120 Query: 121 VQLEFVLNDGRADLIAEGIDLAFRGGVLP--DSSLVARKLVQSHLALIASPRYLEREGSP 178 V + + R D++AE +D+A R P DS LV R L L+ASP + P Sbjct: 121 VTVHLEATNRRVDVVAEAMDIAIRVRPPPIQDSDLVMRVLSDRGQCLVASPALFNKHALP 180 Query: 179 QTLADLVGHACLATSQAPQHTVWKLEGPHGPQ-SVRVAPRLCINTAQGQLRAARAGLGIA 237 QT AD+ LA Q VW L GP G S+ PR AA AG+GI Sbjct: 181 QTPADIAEWPSLALGTPQQTHVWNLFGPDGAHVSLHHHPRFVTGDMMALRDAALAGVGIV 240 Query: 238 LLPTMLASEDLRNGTLVNILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKLE 293 LP M+ E L GTL+++LPD+ + V+ RR + +V ALI++ A++ + Sbjct: 241 QLPRMMLREQLAAGTLLSLLPDWAPRREIVHVVFPSRRGVLPSVRALIDYLAERFQ 296 >gi|152983120|ref|YP_001354504.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 303 Score = 177 bits (449), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 108/303 (35%), Positives = 160/303 (52%), Gaps = 9/303 (2%) Query: 1 MLDLNDIWLFVHVVRAGSFAAAGRRLSMPPNTISRRLQSLEAAMGVRLLQRSTRQLNMTA 60 MLDLND + FVHVV G F AAGR L +P +T+S R+Q LE+ +GVRLL R++R+ MT Sbjct: 1 MLDLNDFYFFVHVVDRGGFTAAGRTLQVPKSTLSHRMQQLESNLGVRLLNRTSRRFGMTD 60 Query: 61 AGREFFERCAPGLEDIEHASTSLTESQGEPAGSLRVAAPVDFFDNFSIEWMHEFMRLYPK 120 AG EF+ L + E A T++ GEP G++R A V E + +F+++YPK Sbjct: 61 AGEEFYRHAVAMLREAELAETTVRNRLGEPTGTVRCTAGVATMQFALAEIITDFLKIYPK 120 Query: 121 VQLEFVLNDGRADLIAEGIDLAFRGGV--LPDSSLVARKLVQSHLALIASPRYLEREGSP 178 V + D D++ E D+A R LPDS+LV + L + L A Y++ G+P Sbjct: 121 VNVVAHSADRPIDIVGENYDIAIRAHTDPLPDSNLVQKTLAPTPWFLFAGADYIDANGAP 180 Query: 179 QTLADLVGHACLATSQAPQHTVWKLEGPHGPQS-----VRVAPRLCINTAQGQLRAARAG 233 + DL H L + VWKL H Q+ + + PRL + G RAA G Sbjct: 181 KKPQDLQNHPSLFMMRTNVAPVWKLR--HVSQAKDEIVMPLTPRLLSDDMVGLQRAAING 238 Query: 234 LGIALLPTMLASEDLRNGTLVNILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKLE 293 LGI LP+ + E +R+G L +LPD+ A+ +R+ L +V ++ A + Sbjct: 239 LGIVALPSYICREAVRSGALRRVLPDWIAGDATITALIPYRKGLLPSVRVFLDHLAAEFP 298 Query: 294 RGI 296 + + Sbjct: 299 KRV 301 >gi|152980836|ref|YP_001354012.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 309 Score = 173 bits (438), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 103/297 (34%), Positives = 151/297 (50%), Gaps = 9/297 (3%) Query: 4 LNDIWLFVHVVRAGSFAAAGRRLSMPPNTISRRLQSLEAAMGVRLLQRSTRQLNMTAAGR 63 L I LF AGSF AA + P +SR + LEA +GVRL R+TRQ+ +T GR Sbjct: 10 LGSIELFCLAAEAGSFTAAANTAGVTPAAVSRSISRLEARLGVRLFVRTTRQIRLTDGGR 69 Query: 64 EFFERCAPGLEDIEHASTSLTESQGEPAGSLRVAAPVDFFDNFSIEWMHEFMRLYPKVQL 123 +FE+C L + A ++ Q +PAG LR++ P + + + EF + YP VQ+ Sbjct: 70 VYFEQCREALAQLVDAERQVSGGQLKPAGLLRISVPTPYGHYRLLPLLPEFRQRYPDVQV 129 Query: 124 EFVLNDGRADLIAEGIDLAFRGGVLPDSSLVARKLVQSHLALIASPRYLEREGSPQTLAD 183 E +++ D E DLA RG DS+L+ARKL ++ L L+A+P YL+R G P+TL D Sbjct: 130 EVHISNRNIDFAEEAYDLAIRGRAPTDSNLIARKLEEAELVLVAAPSYLKRAGKPKTLED 189 Query: 184 LVGHACLATS--QAPQHTVWKLEGPHGPQSVRVAPRL------CINTAQGQLRAARAGLG 235 L H C+ + W P+G + + C G + AR+G G Sbjct: 190 LQKHECIQFELPSTGRRIPWVFH-PNGKVQGKAVDIMTNGGYSCAEDVLGIVTLARSGAG 248 Query: 236 IALLPTMLASEDLRNGTLVNILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKL 292 + + +DLR G LV +LP + + F +Y H R L S V A ++F +KL Sbjct: 249 LVQTYRFIVEDDLREGRLVELLPQFGATSRPFILLYPHARHLSSRVRAFVDFLMEKL 305 >gi|152980915|ref|YP_001353545.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 300 Score = 167 bits (423), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 101/289 (34%), Positives = 152/289 (52%), Gaps = 2/289 (0%) Query: 4 LNDIWLFVHVVRAGSFAAAGRRLSMPPNTISRRLQSLEAAMGVRLLQRSTRQLNMTAAGR 63 L+ + +FV VV +GS +AA +L + +SR L LE G RLL R+TR+L++TAAG Sbjct: 4 LSAMQVFVTVVDSGSQSAAADQLDLSRPVVSRYLAELEEWAGARLLHRTTRKLSLTAAGA 63 Query: 64 EFFERCAPGLEDIEHASTSLTESQGEPAGSLRVAAPVDFFDNFSIEWMHEFMRLYPKVQL 123 E RC LE + + P G LR+ F + + ++++LYP V + Sbjct: 64 EMLPRCRQMLELATDMKNVVAIPEDAPQGLLRITVSTSFGQSHLAAAVADYVKLYPGVTV 123 Query: 124 EFVLNDGRADLIAEGIDLAFRGGVLPDSSLVARKLVQSHLALIASPRYLEREGSPQTLAD 183 + ++ D +L+ E IDLA R D +L+AR+L + A+P YL G P Sbjct: 124 DMLVLDRVVNLVEERIDLAIRISKELDPNLIARRLTVCRSVVCAAPAYLHEHGKPTQAEQ 183 Query: 184 LVGHACLATSQAPQHTVWKLEGPHGPQSVRVAPRLCINTAQGQLRAARAGLGIALLPTML 243 LV H CL S +VW LE P +V V + N A L AA AG GIA+LPT L Sbjct: 184 LVLHNCLTHSY--YGSVWLLERDKLPVNVAVKGNISANDASSLLPAALAGAGIAMLPTFL 241 Query: 244 ASEDLRNGTLVNILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKL 292 A+ +R+G L+ +LP+Y G + VY R+ +P+ + +++F A + Sbjct: 242 AAPYIRSGQLLPLLPEYHPQEFGLFGVYASRKHMPATLRTMLDFLAARF 290 >gi|152982683|ref|YP_001354316.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 299 Score = 162 bits (409), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 95/292 (32%), Positives = 158/292 (54%), Gaps = 4/292 (1%) Query: 4 LNDIWLFVHVVRAGSFAAAGRRLSMPPNTISRRLQSLEAAMGVRLLQRSTRQLNMTAAGR 63 L+++ +F+ ++ +GS AA R+L P I+R L +LE +G RL++R+TR L T AG Sbjct: 4 LDELEIFIAILDSGSLVAASRKLRRSPPAITRALGTLEERIGTRLIERTTRHLVATEAGL 63 Query: 64 EFFERCAPGLEDIEHASTSLTESQGEPA-GSLRVAAPVDFFDNFSIEWMHEFMRLYPKVQ 122 ++ L D E ++ E P G+L+V APV F ++ ++ YP+++ Sbjct: 64 HLAQQARRLLADYEQ---TVQEDASAPLRGTLKVTAPVVFGRRHVAPIVNSYLDQYPEMR 120 Query: 123 LEFVLNDGRADLIAEGIDLAFRGGVLPDSSLVARKLVQSHLALIASPRYLEREGSPQTLA 182 +E + ND DLI EGID+ R G L D+S+VAR++ Q L+ASP Y+ER G P+++A Sbjct: 121 VELITNDRNLDLIEEGIDVGVRIGSLADTSMVARRVGQVQSVLVASPDYIERRGEPKSIA 180 Query: 183 DLVGHACLATSQAPQHTVWKLEGPHGPQSVRVAPRLCINTAQGQLRAARAGLGIALLPTM 242 D+ H + T+ + W+ Q V + PRL +N L AA+AG G+A + + Sbjct: 181 DIAHHDVIFTAIREKAPEWRFRHNGREQIVALTPRLIVNEIDAVLLAAKAGRGLARVLSY 240 Query: 243 LASEDLRNGTLVNILPDYQRDTMGFYAVYVHRRQLPSAVSALIEFFADKLER 294 +++L+ GTL+ +LP + + R + A ++ DKL + Sbjct: 241 QVADELQAGTLLRVLPKLDAPDLPVQLIVPSARLMAPKSRAFLDLAIDKLSK 292 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 683,265 Number of extensions: 25744 Number of successful extensions: 153 Number of sequences better than 1.0e-08: 27 Number of HSP's gapped: 126 Number of HSP's successfully gapped: 27 Length of query: 323 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 240 Effective length of database: 914,170 Effective search space: 219400800 Effective search space used: 219400800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)