BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1977.p
         (295 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980343|ref|YP_001352759.1| hypothetical protein mma_1069 [...   439   e-124

>gi|152980343|ref|YP_001352759.1| hypothetical protein mma_1069
           [Janthinobacterium sp. Marseille]
          Length = 315

 Score =  439 bits (1128), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/296 (72%), Positives = 250/296 (84%), Gaps = 3/296 (1%)

Query: 1   MSSIAPRYRIGLIANRAHQDASDSALVQLLTGSRHRIES-LQPELIVVGRTLDAISQMNL 59
           M++   ++RIGL  +R HQDA +S L +LL GSR  IE  LQP+LIVVGRTLDA+  + L
Sbjct: 14  MTTTPHQFRIGLATSRTHQDAPNSVLARLLNGSRIAIEQHLQPQLIVVGRTLDAMDHLGL 73

Query: 60  LPGYPHLVRFPYGRHGGLMKLVSRTVDPDPQRTLDAVIYLIDPVDPSSTFPEAVALKRQC 119
           L  YPH+ RFPYGRHGGLMKLVSR VD DP R LDAV+YL+DPVDPSS FPEAVALKRQC
Sbjct: 74  LKNYPHIERFPYGRHGGLMKLVSRVVDTDPARRLDAVMYLMDPVDPSSIFPEAVALKRQC 133

Query: 120 VIHGKPFLSTLAGAQEWFELEAIANGAKPDSFLDDRFHLQEEGIALIAHDAMKSRMLELA 179
           VIHGKPFLSTLAGA+EW ELE+IA GA P+  LD+ F L+ EGIA+IAHDAMK RMLE+A
Sbjct: 134 VIHGKPFLSTLAGAREWLELESIAIGAAPNPELDETFDLKNEGIAMIAHDAMKGRMLEIA 193

Query: 180 EKHFEVLDQFAFRCATGTTGGLLNQLAMKMKG-EAGRHWVKPFLSGPLGGDAQIAELILE 238
           E+HF++LDQF FRCATGTTG LLN+LA K+KG EAGR+WVKP+LSGP+GGDAQIAELIL+
Sbjct: 194 ERHFDLLDQFGFRCATGTTGSLLNKLAQKIKGEEAGRNWVKPYLSGPMGGDAQIAELILD 253

Query: 239 R-QCRRVLFLEDPHVARQHEADIQLLERAARTVTAYASCMSDVQWGDRWLSLIKAR 293
           + QCRRVLFLEDPHVARQHEADIQLLERAARTVT YA C+S+   G+RWL L++ R
Sbjct: 254 KDQCRRVLFLEDPHVARQHEADIQLLERAARTVTDYALCISNENCGERWLDLLQKR 309


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 710,817
Number of extensions: 28777
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 212
Effective length of database: 914,170
Effective search space: 193804040
Effective search space used: 193804040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)