BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1974.p
         (295 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981089|ref|YP_001353013.1| hypothetical protein mma_1323 [...   481   e-137

>gi|152981089|ref|YP_001353013.1| hypothetical protein mma_1323
           [Janthinobacterium sp. Marseille]
          Length = 305

 Score =  481 bits (1237), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 220/294 (74%), Positives = 259/294 (88%)

Query: 1   MLSYRHAFHAGNHADVLKHMVIIQLMRYLGQKDTAYMVIDTHAGAGVYALDGDYASKNAE 60
           MLSYRHAFHAGNHADVLKH+V IQL++YL QKDT YM IDTH+GAGVYALDG+YA+KNAE
Sbjct: 1   MLSYRHAFHAGNHADVLKHLVQIQLLKYLNQKDTPYMYIDTHSGAGVYALDGNYAAKNAE 60

Query: 61  YETGIAKLWERKDLPAMVKEYVDVVKSLNPSGKMRYYPGSPYCAEKTMREQDRLRLFELH 120
           +ETGI+KLW+RKDLPA + EYV V+K+LNPSGK+RYYPGSPYCA+  MREQDRLRLFELH
Sbjct: 61  FETGISKLWDRKDLPAPLAEYVQVIKALNPSGKLRYYPGSPYCADAVMREQDRLRLFELH 120

Query: 121 PSEVKVLEDNFRKLEAHAAAQGQRPSTRGKRVMVYRGDGFQGLKALLPPPSRRGLVLIDP 180
           P++ K+L DNFRKLEAHAA QG+RP+ RGKR+M+ RG+GFQGLKALLPPPSRRGLVLIDP
Sbjct: 121 PADSKLLADNFRKLEAHAAEQGKRPTVRGKRIMIERGNGFQGLKALLPPPSRRGLVLIDP 180

Query: 181 PYEDKRDYAHVAQVLADALTRFPTGTYAVWYPVLQRNESRQLPERLKRLGAKSWLNVTLA 240
           PYEDK DY  V Q ++DALTRF TGTYAVWYPVL R ESRQ+P++LKRL A  WLNVTL+
Sbjct: 181 PYEDKTDYRTVVQTVSDALTRFATGTYAVWYPVLNRLESRQMPDKLKRLSANGWLNVTLS 240

Query: 241 IHGPAPDGFGLHNSGMFILNPPWTLEAGLKEVMPYLIEVLGVDDSAEYVLESGE 294
           +  P+PDGFGLH+SGMF+ NPPWTLE  L+E+MPYL++ LG D+ A + LESG+
Sbjct: 241 VTTPSPDGFGLHSSGMFVHNPPWTLEPMLRELMPYLVKTLGGDEGAGFTLESGQ 294


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 747,927
Number of extensions: 32299
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 212
Effective length of database: 914,170
Effective search space: 193804040
Effective search space used: 193804040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)