BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1973.p
         (555 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980579|ref|YP_001353275.1| EriC chloride channel protein [...    94   2e-20

>gi|152980579|ref|YP_001353275.1| EriC chloride channel protein
           [Janthinobacterium sp. Marseille]
          Length = 580

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 131/516 (25%), Positives = 222/516 (43%), Gaps = 42/516 (8%)

Query: 50  VLLPTCGGVVAGLFLVWAKKTPAGNG-GDYMEAVAIGDGAIPVRNTLLRSISSLASIASG 108
           + LP  GG++AGL   +      G+G  + +EA+      +  +  +L+ ++S   I SG
Sbjct: 68  IALPVLGGLIAGLIARYGSDKVRGHGIPEAIEAILFRKSQMSPKVAVLKPLTSGIVIGSG 127

Query: 109 GSIGREGPMVQLSALCASLVGK-FSHFPSSRLRLLVACGAAAGITSAYNAPIAGAFFITE 167
           G  G EGP++       SL+ + FS   + R  LLVA GA AG+T+ +  P+A      E
Sbjct: 128 GPFGAEGPIIMTGGAIGSLIAQNFSVSAAERKTLLVA-GATAGMTAVFGTPVAAVLLAVE 186

Query: 168 IVLGSLVMESFGPVMVASVVANITMRELPGYRATYEMPYFP----EIGGWEVLLFLVLGV 223
           ++L      S  PV++A  VA      L         P FP     +G     + +V G+
Sbjct: 187 LLLFEWRPRSLLPVILACAVAAFCRPLL-----LESGPLFPLHTAPVGMAAFAICIVAGL 241

Query: 224 LAGILAPQFLRVLELGKHGFAKFKLPLPVRLGVGGLLVGLISIQVPEVWGNGYSLVNSLL 283
            +G+L+      L   +  F K  L       +GGL+VG+     P   G GY +++ LL
Sbjct: 242 ASGMLSAGMSLALYRVEDWFGKLPLHWMWWPAIGGLVVGIGGYFQPRALGVGYDVISDLL 301

Query: 284 HTTWLWQMVLMVLVIKVLATAITVGSGAVGGIFTPTLFVGAAVGYLFGDTAQALLPVHTS 343
           +      + L +L++K +   + +GSG  GG+  P L +GA +G +       L+P   S
Sbjct: 302 NNHIALSVALSLLLVKAVIWVVALGSGTSGGVLAPLLMLGAGLGAVIAH----LVP--GS 355

Query: 344 QPFAYAMVGMGAFLAAASYAPLMAILMIFEMTLSYQVVLPLMLSCVVAYVVARSVDGRSM 403
            P  + +V M A LA    APL A +    +T  +  +LPL+L+  V+Y           
Sbjct: 356 DPTLWPLVCMAAVLAGVLGAPLTAAIFALGLTGDFNALLPLLLATGVSY----------G 405

Query: 404 YEITLKRHRDNEERLRLRGTHMSE--LIRPAETVLMEDASLEEV----SALFLKYPVKYV 457
           + + L R     E++  RG H+     + P E   + D    ++    + L L    +  
Sbjct: 406 FTVLLMRRSIMTEKIARRGLHIYREYSVDPQERAFVGDVMTTDIVSIAAGLTLHETAQQY 465

Query: 458 YIVDAQQRYQGVVALQDITSWLLDKKQAAGSMA--------RDFLRPHFLHEVTPDMSLG 509
           +  + + R   V+        +L+++     +A           L    +    P  +  
Sbjct: 466 FGSEQRHRSFPVIDQHGALLGMLERESLLHHIALHGGDQQLASILDSAHMQLALPTETCQ 525

Query: 510 QALQLFLDHQGERLPVIASAEDPRLLGVVFKTSLLD 545
              +       ERL V+A  E  RLLG++ ++ LL 
Sbjct: 526 VVGRRMAIQHAERLAVVADKESRRLLGIISRSDLLK 561


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.325    0.140    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,188,760
Number of extensions: 46363
Number of successful extensions: 222
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 467
Effective length of database: 895,685
Effective search space: 418284895
Effective search space used: 418284895
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)