BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1972.p
         (134 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981866|ref|YP_001355354.1| molybdenum-binding transcriptio...   107   3e-25
gi|152981988|ref|YP_001355349.1| molybdenum transport regulatory...    70   4e-14

>gi|152981866|ref|YP_001355354.1| molybdenum-binding transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 138

 Score =  107 bits (266), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 64/117 (54%), Positives = 80/117 (68%), Gaps = 3/117 (2%)

Query: 8   RVRVMQGDTIAFGPGKADLLQAIAQTGSISGAAREMAMSYRRAWLLVEEMNRCFASPLVA 67
           RVRV+ G+  A GPG+ADL+ AI +TGSIS A REM MSYRRAW LVE  N  F  PLV 
Sbjct: 15  RVRVLMGELTAMGPGRADLIDAIERTGSISAAGREMNMSYRRAWTLVETTNASFIEPLVV 74

Query: 68  TATGGARGGGAAVTELGQEVLARYRRMQKKAATAIAAD---LRHLHSLMQQPEADGQ 121
           T+TGG+ GGGA VT+ G+ V+ RYR M++KA+ AI++D      L S    P A G+
Sbjct: 75  TSTGGSGGGGAQVTDFGRGVVERYRAMERKASKAISSDFAVFSKLLSTTPPPAAKGK 131


>gi|152981988|ref|YP_001355349.1| molybdenum transport regulatory
           protein ModE [Janthinobacterium sp. Marseille]
          Length = 264

 Score = 70.1 bits (170), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 53/90 (58%)

Query: 25  DLLQAIAQTGSISGAAREMAMSYRRAWLLVEEMNRCFASPLVATATGGARGGGAAVTELG 84
           +LL+ I  +GSIS AA  M MSY+ AW  VE +N     PLV    GG+ GGG  +TE G
Sbjct: 25  ELLERIDASGSISAAATAMGMSYKAAWQAVESVNNLSHEPLVIRQPGGSTGGGTCLTEYG 84

Query: 85  QEVLARYRRMQKKAATAIAADLRHLHSLMQ 114
           + V+A YRR++++ A   AA  R +    Q
Sbjct: 85  RRVVATYRRLEQEWAAVPAAIGRTMDDFDQ 114


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.127    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 217,110
Number of extensions: 5979
Number of successful extensions: 32
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 2
Length of query: 134
Length of database: 1,221,021
Length adjustment: 74
Effective length of query: 60
Effective length of database: 947,443
Effective search space: 56846580
Effective search space used: 56846580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 124 (52.4 bits)