BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1969.p (220 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 142 2e-35 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 140 7e-35 gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport sy... 128 2e-31 gi|152981123|ref|YP_001355346.1| ABC-type molybdate transport sy... 115 2e-27 gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport sys... 115 2e-27 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 142 bits (357), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 85/210 (40%), Positives = 118/210 (56%), Gaps = 9/210 (4%) Query: 12 RAGDRIFDLDIALASHS-QRIVLYGPSGSGKSLTLKAIAGLIRPDRGHIRVRGRTLFDSA 70 R GD +I+L+ + + L GPSG GK+ L+ IAG PD G I L D Sbjct: 12 RFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQI------LLDGV 65 Query: 71 EGIDVRVQERNVAYLFQDYALFPHLTVAQNIAFGLSRGSCNPRRPTGHPAVQRWLQAFEL 130 + V ++R V +FQ+YALFPH+TV NIAF L N + V L+ L Sbjct: 66 DLTGVPPEQRPVRTVFQNYALFPHMTVGGNIAFPLEM--ANTPKAEIQKKVDEALEDVRL 123 Query: 131 QAIAHSHPAQISGGQRQRVALARALVAEPEMLLLDEPFSALDLSLRQRMRQELAELQTHL 190 A +P ++SGGQRQRV++ARALV P++LLLDEP SALD LR++M+ EL LQ + Sbjct: 124 TGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKEV 183 Query: 191 QVPMLLITHDPADVEALGQTVFELRDGQLR 220 + + +THD A+ AL + + GQ+ Sbjct: 184 GITFIYVTHDQAEALALSHRIAVMNKGQVE 213 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 140 bits (353), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 78/189 (41%), Positives = 108/189 (57%), Gaps = 8/189 (4%) Query: 33 LYGPSGSGKSLTLKAIAGLIRPDRGHIRVRGRTLFDSAEGIDVRVQERNVAYLFQDYALF 92 L GPSG GK+ L+ IAGL +PD G + L D + V+ER V ++FQ YALF Sbjct: 33 LLGPSGCGKTTLLRIIAGLEQPDHGQV------LLDGEDASARHVRERQVGFVFQHYALF 86 Query: 93 PHLTVAQNIAFGLSR--GSCNPRRPTGHPAVQRWLQAFELQAIAHSHPAQISGGQRQRVA 150 H+TV +NIAFGL + P V + L+ +L +A +P Q+SGGQRQR+A Sbjct: 87 KHMTVFENIAFGLRVRPAATRPSESQIKEKVTKLLELVQLDWLADRYPPQLSGGQRQRIA 146 Query: 151 LARALVAEPEMLLLDEPFSALDLSLRQRMRQELAELQTHLQVPMLLITHDPADVEALGQT 210 LARAL EP +LLLDEPF ALD +R+ +R+ L L L V + +THD + + Sbjct: 147 LARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDDLHVTSIFVTHDQEEALEVADQ 206 Query: 211 VFELRDGQL 219 + + G + Sbjct: 207 IVLMNKGNV 215 >gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 363 Score = 128 bits (322), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 76/186 (40%), Positives = 111/186 (59%), Gaps = 6/186 (3%) Query: 32 VLYGPSGSGKSLTLKAIAGLIRPDRGHIRVRGRTLFDSAEGIDVRVQERNVAYLFQDYAL 91 L G SG GK+ L+AIAG G I + G+ L +A+ V + R+V +FQDYAL Sbjct: 44 CLLGQSGCGKTTVLRAIAGFESLIAGRITLGGKEL-SNAQHTTVP-EARHVGVVFQDYAL 101 Query: 92 FPHLTVAQNIAFGLSRGSCNPRRPTGHPAVQRWLQAFELQAIAHSHPAQISGGQRQRVAL 151 FPHL+V+ NI FGL + + R + + L LQA P ++SGGQ+QRVAL Sbjct: 102 FPHLSVSDNIGFGLRKLAAAERNGR----INKLLALVGLQAQEKKFPHELSGGQQQRVAL 157 Query: 152 ARALVAEPEMLLLDEPFSALDLSLRQRMRQELAELQTHLQVPMLLITHDPADVEALGQTV 211 ARAL +P++LLLDEPFS LD+ LR+R+ E+ ++ + +L+THD + A+ + Sbjct: 158 ARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVLVTHDQHEAFAIADQI 217 Query: 212 FELRDG 217 ++DG Sbjct: 218 GVMQDG 223 >gi|152981123|ref|YP_001355346.1| ABC-type molybdate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 385 Score = 115 bits (289), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 66/203 (32%), Positives = 111/203 (54%), Gaps = 5/203 (2%) Query: 18 FDLDIALASHSQRIV-LYGPSGSGKSLTLKAIAGLIRPDRGHIRVRGRTLFDSAEGIDVR 76 F LD+ L + + L+GPSGSGK+ L+A+ GL R ++ V G D I + Sbjct: 42 FKLDVDLTLPGRGVTALFGPSGSGKTTCLRAMTGLERFSGSYLEVNGEVWQDDERNIFLP 101 Query: 77 VQERNVAYLFQDYALFPHLTVAQNIAFGLSRGSCNPRRPTGHPAVQRWLQAFELQAIAHS 136 +R + Y+FQ+ +LF HL V +N+ +G R S T +++ + ++ + Sbjct: 102 TYKRPLGYVFQEASLFAHLNVQRNLEYGRRRVSA----ATHQVSLEHAVALLDIGHLLQR 157 Query: 137 HPAQISGGQRQRVALARALVAEPEMLLLDEPFSALDLSLRQRMRQELAELQTHLQVPMLL 196 +P ++SGG+RQRVA+ARAL P +LL+DEP +ALD ++ + L L L +P++ Sbjct: 158 NPDKLSGGERQRVAIARALATSPRILLMDEPLAALDSKRKEEIMPYLERLHDELDIPVIY 217 Query: 197 ITHDPADVEALGQTVFELRDGQL 219 ++H +V L + L G++ Sbjct: 218 VSHSADEVARLADHLVLLESGKV 240 >gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 294 Score = 115 bits (288), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/203 (37%), Positives = 112/203 (55%), Gaps = 17/203 (8%) Query: 11 LRAGDRI-FDLDIALASHSQRIVLYGPSGSGKSLTLKAIAGLIRPDRGHIRVRGRTLFDS 69 +RA R+ FD+ + R VL GPSG GKS LKA+AG I P G IR+ G+ + + Sbjct: 56 VRATHRVSFDVH-----QADRFVLLGPSGCGKSTLLKAVAGFILPVEGEIRLDGKAV--T 108 Query: 70 AEGIDVRVQERNVAYLFQDY-ALFPHLTVAQNIAFGLSRGSCNPRRPTGHPAVQRWLQAF 128 A G D V +FQ++ L P TV QN+ F L R+ A+ +L Sbjct: 109 APGPDRIV-------VFQEFDQLSPWKTVKQNVIFPLLASRTLGRKEAEERALH-YLAKV 160 Query: 129 ELQAIAHSHPAQISGGQRQRVALARALVAEPEMLLLDEPFSALDLSLRQRMRQELAELQT 188 L + HP Q+SGG +QRVA+ARAL +P +LL+DEPF+ALD R++M++EL +L Sbjct: 161 GLSKFSDVHPHQLSGGMKQRVAIARALAMQPRVLLMDEPFAALDALTRRKMQEELLQLWD 220 Query: 189 HLQVPMLLITHDPADVEALGQTV 211 + +L +TH + +G + Sbjct: 221 EVHFTLLFVTHSIEEALVVGNRI 243 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.138 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 475,986 Number of extensions: 17508 Number of successful extensions: 220 Number of sequences better than 1.0e-08: 55 Number of HSP's gapped: 156 Number of HSP's successfully gapped: 57 Length of query: 220 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 140 Effective length of database: 925,261 Effective search space: 129536540 Effective search space used: 129536540 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 127 (53.5 bits)