BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1965.p (561 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982239|ref|YP_001353357.1| hypothetical protein mma_1667 [... 117 3e-27 gi|152981462|ref|YP_001353834.1| signal transduction protein [Ja... 111 1e-25 gi|152981134|ref|YP_001352907.1| signal transduction protein [Ja... 110 2e-25 gi|152981463|ref|YP_001352343.1| signal transduction protein [Ja... 109 4e-25 gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [... 106 3e-24 >gi|152982239|ref|YP_001353357.1| hypothetical protein mma_1667 [Janthinobacterium sp. Marseille] Length = 283 Score = 117 bits (292), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 76/209 (36%), Positives = 110/209 (52%), Gaps = 16/209 (7%) Query: 359 IRKLTLAAKSIGNGS--PFPTLNIDRNDEIGQLAQSFVEM----ERNLRTDRLTNVLNR- 411 I LT A ++G G P L++ DE+G EM + D LT + NR Sbjct: 72 IHGLTGPALALGAGKLVTVPPLHLREADEVGTSLARASEMLHQAQHQANHDVLTGLANRA 131 Query: 412 ---DSLIAQIDFRRRNSSQAVPLHFALLFIDLDRFKAVNDEYGHDEGDKVLITIAERLQH 468 + + Q+ RN + ++L+IDLD FKAVND++GH+ GDK+L +A RL+ Sbjct: 132 LFHEIVSQQLALCERNKTV-----LSILYIDLDGFKAVNDKHGHEAGDKLLRAVASRLKT 186 Query: 469 SLRHDDSVARFGGDEFVVYLHGVTEVEVARSIGDKIRHAVNKPIAGRDGQQYTVDASVGV 528 + RH D VAR GGDEF + + G +E AR + +K+ A++ P D + AS+GV Sbjct: 187 NSRHSDVVARLGGDEFAMVMVGA-HMENARFVAEKMVEAISAPYVLDDTLTSHISASIGV 245 Query: 529 SLYPDDGLDVETLLRVADSRMFDQKRLHR 557 + YP+ G E LL AD M+ K L R Sbjct: 246 ATYPESGTTSEALLHRADGAMYKAKNLGR 274 >gi|152981462|ref|YP_001353834.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 709 Score = 111 bits (277), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/295 (30%), Positives = 146/295 (49%), Gaps = 45/295 (15%) Query: 285 VLLGARSQGSKIEVAFRLHRD-PAGLEW--------------LAISAAPRSDF-LGSVTS 328 +L+ + G+ + +AFRL ++ P + W + + ++F LGS+ S Sbjct: 146 ILIAISASGAALWIAFRLRKNTPNVVRWRAMAAVVMGAAIIGMHYTGMAAANFPLGSICS 205 Query: 329 GVYQTLILGLLAVGLSFVIGLLLLRWVLRDIRKLTLAAKSIGNGSPFPTLNIDRNDEIGQ 388 + + G LA+ + V L +L I LT L+ + + G+ Sbjct: 206 AAVEGVSPGWLAI-VVIVTTLAVLA-----IALLT------------SVLDARLDSQTGK 247 Query: 389 LAQSFV----EMERNLRTDRLTNVLNRDSLIAQIDFRRRNSSQAVPLHFALLFIDLDRFK 444 L +S E+ + D LT + NR L ++D + + FAL+FIDLD FK Sbjct: 248 LVRSLALANQELTKQALQDNLTKLPNRTLLEDRLDQMVHKAVREQS-RFALMFIDLDGFK 306 Query: 445 AVNDEYGHDEGDKVLITIAERLQHSLRHDDSVARFGGDEFVVYLHGVTEVEVARSIGDKI 504 A+ND GH GD +LI +A+R++ ++R D+ AR GGDEFV+ + V E E A S+ DK+ Sbjct: 307 AINDSLGHHIGDLLLIDVAKRIRDNIRAQDTAARLGGDEFVMLIE-VNEPEDAASVADKL 365 Query: 505 RHAVNKPIAGRDGQQYT--VDASVGVSLYPDDGLDVETLLRVADSRMFDQKRLHR 557 +N+P D QY + AS+G+++YP+DG LL AD+ M+ K R Sbjct: 366 CTTLNQPF---DIAQYNLGISASIGIAVYPEDGSTRHDLLIHADAAMYHTKSTGR 417 >gi|152981134|ref|YP_001352907.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 898 Score = 110 bits (275), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 66/162 (40%), Positives = 92/162 (56%), Gaps = 4/162 (2%) Query: 395 EMERNLRTDRLTNVLNRDSLIAQIDFRRRNSSQAVPLHFALLFIDLDRFKAVNDEYGHDE 454 EM R D LT + NR ++ + + +++A A+LFIDLD FK VND GH Sbjct: 460 EMSRLATEDGLTALPNRHWFMSYLP-KALENARANATMLAILFIDLDDFKNVNDTLGHSA 518 Query: 455 GDKVLITIAERLQHSLRHDDSVARFGGDEFVVYLHGVTEVEVARSIGDKIRHAVNKPIA- 513 GD++L T+A+RL+ LR D V R GGDEF V L + E A I I A+ +P Sbjct: 519 GDQLLCTVAKRLRSVLRPSDKVIRIGGDEFTVILEAIHSEEEAAHIAHAINQALREPFEI 578 Query: 514 GRD--GQQYTVDASVGVSLYPDDGLDVETLLRVADSRMFDQK 553 RD Q+ + S+G+S++P DG DVETL++ AD M+ K Sbjct: 579 SRDTTSQKNRIGGSIGISIFPRDGQDVETLVKNADIAMYAAK 620 >gi|152981463|ref|YP_001352343.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 457 Score = 109 bits (273), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 65/173 (37%), Positives = 102/173 (58%), Gaps = 9/173 (5%) Query: 386 IGQLAQSFVEMERNLRTDRLTNVLNRDSLIAQIDFRRRNSSQAVPLH---FALLFIDLDR 442 +G + +S E++R + D LT + NR L D R + + H A+ F+DLD Sbjct: 282 LGGVIRSRKELQRLAQYDVLTGLPNRRLL----DSRLKKAIAGANGHHHLVAVCFLDLDG 337 Query: 443 FKAVNDEYGHDEGDKVLITIAERLQHSLRHDDSVARFGGDEFVVYLHGVTEVEVARSIGD 502 FK VND GH GD++L +A+RLQH +R D++ARFGGDEFVV L + ++ I + Sbjct: 338 FKEVNDSLGHAAGDRLLQQMAQRLQHCMRATDTLARFGGDEFVVILDRLNSIDECEKILE 397 Query: 503 KIRHAVNKPIAGRDGQQYTVDASVGVSLYPDDGLDVETLLRVADSRMFDQKRL 555 ++ H +P+ DG + V AS+GV+++ G++ E LL+ AD+ M+ K+L Sbjct: 398 RMIHTAQEPVH-MDGNEVIVSASIGVAMF-QPGVEREQLLKRADTAMYQAKQL 448 >gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [Janthinobacterium sp. Marseille] Length = 956 Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 64/167 (38%), Positives = 96/167 (57%), Gaps = 10/167 (5%) Query: 395 EMERNLRTDRLTNVLNR----DSLIAQIDFRRRNSSQAVPLHFALLFIDLDRFKAVNDEY 450 E+E D LT + NR D L I + R + P+ A F+DLDRFK VND Sbjct: 514 ELEFQTNRDALTGLANRSLLRDRLSQAISYAHRYNH---PIWIA--FVDLDRFKFVNDTL 568 Query: 451 GHDEGDKVLITIAERLQHSLRHDDSVARFGGDEFVVYLHGVTEVEVARSIGDKIRHAVNK 510 GH GD +L IAERLQH++R D+V+R GGDEFV+ L + ++ I +I + + Sbjct: 569 GHQAGDLLLKAIAERLQHAVRDTDTVSRMGGDEFVLILPERVDAGLSTGIVQRIMDGIAQ 628 Query: 511 PIAGRDGQQYTVDASVGVSLYPDDGLDVETLLRVADSRMFDQKRLHR 557 P+ +G ++ + +S+GV++YP+DG+ E L++ AD M+ K R Sbjct: 629 PLT-IEGHEFFISSSIGVAVYPNDGVTPEELIKHADIAMYRAKETGR 674 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.138 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,338,743 Number of extensions: 58711 Number of successful extensions: 262 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 243 Number of HSP's successfully gapped: 29 Length of query: 561 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 473 Effective length of database: 895,685 Effective search space: 423659005 Effective search space used: 423659005 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)