BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1964.p (861 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979798|ref|YP_001353008.1| ATP-dependent Clp protease ATP-... 1493 0.0 gi|152980685|ref|YP_001354204.1| ATP-dependent Clp protease ATP-... 307 2e-84 >gi|152979798|ref|YP_001353008.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Janthinobacterium sp. Marseille] Length = 859 Score = 1493 bits (3864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 725/861 (84%), Positives = 801/861 (93%), Gaps = 3/861 (0%) Query: 1 MRLDKLTTKLQEALADAQSQAVGHDNQYIEPVHLILALLNQDDGGARSLLQRAGVNVNGL 60 MRLDKLTTKLQEALADAQS AVG+DNQYIEPVH+++ALL+QDD RSLLQRAG N+NG+ Sbjct: 1 MRLDKLTTKLQEALADAQSHAVGNDNQYIEPVHVLVALLSQDDSSTRSLLQRAGANINGM 60 Query: 61 ISALQAALKRLPQVSGNGGEVQVGRELVALLNLADKEAQKHGDQFVASEMVLLGLVDDKS 120 +AL++AL RLP+VSG GGEVQ+GR+L +LLNLADKE+Q HGDQF+A+EMVLL L +DKS Sbjct: 61 TTALRSALDRLPKVSGTGGEVQIGRDLSSLLNLADKESQMHGDQFIATEMVLLALTEDKS 120 Query: 121 DAGRAARENGLTRKSLEAAITAVRGGASVSSQQDEGQREALKKYTLDLTERARAGKLDPV 180 +AG+ ARENGLTRK+LEAAI AVRG + V S EGQREALKKYTLDLTERAR GKLDPV Sbjct: 121 EAGKIARENGLTRKALEAAIKAVRGSSKVDSADGEGQREALKKYTLDLTERARIGKLDPV 180 Query: 181 IGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPDSLKSKRVLSL 240 IGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPDSLK KRVLSL Sbjct: 181 IGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPDSLKGKRVLSL 240 Query: 241 DMAALLAGAKYRGEFEERLKAVLKEIAQDEGQTIVFIDELHTMVGAGKAEGAMDAGNMLK 300 DMA+LLAGAKYRGEFEERLKAVL E+A+DEGQTIVFIDE+HT+VGAGKAEGAMDAGNMLK Sbjct: 241 DMASLLAGAKYRGEFEERLKAVLTELAEDEGQTIVFIDEMHTLVGAGKAEGAMDAGNMLK 300 Query: 301 PALARGELHCVGATTLDEYRQYIEKDAALERRFQKILVDEPSVEATIAILRGLQEKYEVH 360 PALARGELHCVGATTLDEYR+YIEKDAALERRFQKI+V EP+VEATIAILRGLQEKYE+H Sbjct: 301 PALARGELHCVGATTLDEYRKYIEKDAALERRFQKIIVAEPTVEATIAILRGLQEKYELH 360 Query: 361 HGVDITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAASKIKIEIDSKPEVMDKLDRRLI 420 HGVDITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAASKIKIE+DSKPEVMDKLDRR+I Sbjct: 361 HGVDITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAASKIKIELDSKPEVMDKLDRRVI 420 Query: 421 QLKIEREAVKREKDEASQKRLQLIEEEIEKLEREYADLEEIWKAEKSTAQGGQQLKEEIE 480 QLKIEREA+K+EKDEASQKRL LIEEEIE+L REYADLEEIWKAEKS+AQG Q +KEEIE Sbjct: 421 QLKIEREAIKKEKDEASQKRLALIEEEIERLGREYADLEEIWKAEKSSAQGSQHIKEEIE 480 Query: 481 KVRLQMEEATRKSDWQKVSELKYGKLAELEAALEVQNKKDAAGVVSEKPKLVRTQVGAEE 540 KVRLQMEEATRKSDWQ+VSEL+Y L +LEA L+ K + V + KP+LVRTQVGAEE Sbjct: 481 KVRLQMEEATRKSDWQRVSELQYSTLPQLEAQLKNAVKGE---VSAGKPQLVRTQVGAEE 537 Query: 541 IAEIVARATGIPVSRMMQGEREKLLHMEDVLHERVVGQDEAIVAVSDAIRRSRAGLGDPS 600 IAE+V+RATGIPVSRMM GEREKLL MED LH+RVVGQ EAIVAVSDAIRRSRAGLGDP Sbjct: 538 IAEVVSRATGIPVSRMMTGEREKLLQMEDALHKRVVGQHEAIVAVSDAIRRSRAGLGDPD 597 Query: 601 KPYGSFMFLGPTGVGKTELCKALASYLFDTEEAMIRIDMSEFMEKHSVARLIGAPPGYVG 660 +PYGSFMFLGPTGVGKTELCKALAS++FDTE+++IRIDMSEFMEKHSVARLIGAPPGYVG Sbjct: 598 RPYGSFMFLGPTGVGKTELCKALASFMFDTEDSLIRIDMSEFMEKHSVARLIGAPPGYVG 657 Query: 661 YEEGGYLTEAVRRKPYSVILLDEIEKAHPDVFNVLLQVLDDGRMTDGQGRTVDFKNTVIV 720 YEEGGYLTEAVRRKPY VILLDEIEKAHPDVFNVLLQVLDDGRMTDGQGRTVDFKNTVIV Sbjct: 658 YEEGGYLTEAVRRKPYCVILLDEIEKAHPDVFNVLLQVLDDGRMTDGQGRTVDFKNTVIV 717 Query: 721 MTSNLGSHKIQSMEDSDPALVKLAVMAEVRTHFRPEFINRVDEIVVFHALDAKNIGAIAK 780 MTSNLGSHKIQSME ++PAL+K+AVMAEV+ HFRPEFINR+DEIV FHALD KNIG+IAK Sbjct: 718 MTSNLGSHKIQSMEGNEPALIKMAVMAEVQGHFRPEFINRIDEIVAFHALDEKNIGSIAK 777 Query: 781 IQLRILEQRLAKLEIGLQISEAGLQKIAEAGFDPVYGARPLKRAIQQEIENPLSKQILAG 840 IQL++LE+RLA++++ + +SE LQKIAEAGFDPVYGARPLKRAIQ +IENPLSK IL G Sbjct: 778 IQLQVLEKRLARMDMSMDVSEDALQKIAEAGFDPVYGARPLKRAIQHQIENPLSKAILEG 837 Query: 841 KFGPKDVVQVDVQNGQLAFSK 861 KFGPKDV+ +DVQ+G+L F+K Sbjct: 838 KFGPKDVISLDVQDGELVFTK 858 >gi|152980685|ref|YP_001354204.1| ATP-dependent Clp protease ATP-binding subunit ClpA [Janthinobacterium sp. Marseille] Length = 767 Score = 307 bits (787), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 180/402 (44%), Positives = 249/402 (61%), Gaps = 22/402 (5%) Query: 26 NQYIEPVHLILALLNQDDGGARSLLQRAGVNVNGLISALQAAL-KRLPQVSGNG---GEV 81 +++I HL+LALL D+ A +L+ VN+ L L + P V G + Sbjct: 22 HEFITVEHLLLALL--DNPSAAEVLRACAVNIEDLRKTLTNFIGDNTPTVPGAAEVDTQP 79 Query: 82 QVGRELVALLNLADKEAQKHGDQFVASEMVLLGLVDDK-SDAGRAARENGLTRKSLEAAI 140 +G + V + ++ +G + V VL+ + +K S A + G+TR + I Sbjct: 80 TLGFQRVIQRAIMHVQSASNGKKEVTGANVLVAIFGEKDSHAVYYLHQQGVTRLDVVNFI 139 Query: 141 T-------------AVRGGASVSSQQDEGQREALKKYTLDLTERARAGKLDPVIGRDDEI 187 + A G S + + + AL ++T +L + A GK+DP+IGR+ E+ Sbjct: 140 SHGVRKDQQSDAQKAPEGAEDAPSGEGQQKESALDQFTQNLNKMASEGKIDPLIGREGEV 199 Query: 188 RRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPDSLKSKRVLSLDMAALLA 247 R IQ L RR KNNP+L+GE GVGKTAI EGLA RI G+VP+ L++ V SLDM ALLA Sbjct: 200 ERVIQTLCRRRKNNPLLVGEAGVGKTAIAEGLAWRITQGDVPEVLQNAVVYSLDMGALLA 259 Query: 248 GAKYRGEFEERLKAVLKEIAQDEGQTIVFIDELHTMVGAGKAE-GAMDAGNMLKPALARG 306 G KYRG+FE+RLKAVLK++ +D I+FIDE+HT++GAG A G +DA N+LKPAL+ G Sbjct: 260 GTKYRGDFEQRLKAVLKQL-KDNPNGILFIDEIHTIIGAGSASGGTLDASNLLKPALSNG 318 Query: 307 ELHCVGATTLDEYRQYIEKDAALERRFQKILVDEPSVEATIAILRGLQEKYEVHHGVDIT 366 +L C+GATT E+R EKD AL RRFQKI V+EP+VE TI ILRGL+ ++E HHGV + Sbjct: 319 QLKCIGATTFTEFRGVFEKDHALSRRFQKIDVNEPTVEQTIQILRGLKSRFEEHHGVKYS 378 Query: 367 DPAIVAAAELSHRYITDRFLPDKAIDLIDEAASKIKIEIDSK 408 A+ +AAEL+ R+I DR LPDKAID+IDEA + +I SK Sbjct: 379 ASALTSAAELAARFINDRHLPDKAIDVIDEAGAAQRILPKSK 420 Score = 276 bits (706), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 153/351 (43%), Positives = 219/351 (62%), Gaps = 19/351 (5%) Query: 512 ALEVQNKKDAAGVVSEKPKLVRTQVGAEEIAEIVARATGIPVSRMMQGEREKLLHMEDVL 571 A++V ++ AA + K K +T +G EI +I+++ IP + Q +R KL ++ L Sbjct: 402 AIDVIDEAGAAQRILPKSKQKKT-IGKSEIEDIISKIARIPAQTVNQDDRSKLQTIDRDL 460 Query: 572 HERVVGQDEAIVAVSDAIRRSRAGLGDPSKPYGSFMFLGPTGVGKTELCKALASYLFDTE 631 V GQD A+ A+ AI+ +RAGLG KP GSF+F GPTGVGKTE K LA F Sbjct: 461 KNVVFGQDPALEALGSAIKVARAGLGKTDKPIGSFLFSGPTGVGKTEAAKQLA---FIMG 517 Query: 632 EAMIRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEIEKAHPDV 691 +IR DMSE+ME+H+V+RLIGAPPGYVG+++GG LTEA+ +KP++V+LLDEIEKAHPD+ Sbjct: 518 IDLIRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAITKKPHAVLLLDEIEKAHPDI 577 Query: 692 FNVLLQVLDDGRMTDGQGRTVDFKNTVIVMTSNLGSHKIQ--------SMEDSDPALVKL 743 FN+LLQV+D G +TD GR DF+N +I+MT+N G+ +Q E D Sbjct: 578 FNILLQVMDHGTLTDNNGRKADFRNVIIIMTTNAGAESLQKRTIGFTEKKETGDE----- 632 Query: 744 AVMAEVRTHFRPEFINRVDEIVVFHALDAKNIGAIAKIQLRILEQRLAKLEIGLQISEAG 803 MA+++ F PEF NR+D I+ F ALD + I + L LE++L + ++ +E Sbjct: 633 --MADIKRMFTPEFRNRLDAIISFRALDEEIILRVVDKFLMQLEEQLHEKKVEAIFTEKL 690 Query: 804 LQKIAEAGFDPVYGARPLKRAIQQEIENPLSKQILAGKFGPKDVVQVDVQN 854 +A+ GFDP+ GARP+ R IQ I L+ ++L G+ V VD+ + Sbjct: 691 RTFLAKKGFDPLMGARPMSRLIQDMIRKALADELLFGRLVSGGKVTVDLDD 741 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.134 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,810,365 Number of extensions: 74529 Number of successful extensions: 371 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 365 Number of HSP's successfully gapped: 3 Length of query: 861 Length of database: 1,221,021 Length adjustment: 91 Effective length of query: 770 Effective length of database: 884,594 Effective search space: 681137380 Effective search space used: 681137380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 134 (56.2 bits)