BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1963.p
         (124 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981875|ref|YP_001353007.1| camphor resistance CrcB protein...   174   1e-45

>gi|152981875|ref|YP_001353007.1| camphor resistance CrcB protein
           [Janthinobacterium sp. Marseille]
          Length = 124

 Score =  174 bits (442), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 83/124 (66%), Positives = 102/124 (82%)

Query: 1   MGWLAVGMGATLGAWLRWRISVVWNVAGHFVPLGTLAANWIGAFVIGFLVAYFEEHPGLP 60
           M WLAVG+GA LGAWLRW +S+ +N   + VP+GTLAAN +G +++G  VA+F  HPG+P
Sbjct: 1   MSWLAVGLGAALGAWLRWGLSIWFNAVNNHVPVGTLAANLVGGYLVGLAVAFFSGHPGVP 60

Query: 61  PEWRLFAVTGFLGGLTTFSTFSAEAMILLQRGDYLWAIGHSGLHLLGSIVLCVTGFACYR 120
           PEWRLFAVTGFLGGLTTFSTFSAEA++LLQRGDY+WA+ H+ LHL+GSI  C+ GFA YR
Sbjct: 61  PEWRLFAVTGFLGGLTTFSTFSAEAVLLLQRGDYMWALAHTALHLIGSIACCIAGFATYR 120

Query: 121 ALVA 124
           A  A
Sbjct: 121 AFAA 124


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.330    0.144    0.504 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 320,079
Number of extensions: 11309
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 1,221,021
Length adjustment: 73
Effective length of query: 51
Effective length of database: 951,140
Effective search space: 48508140
Effective search space used: 48508140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 124 (52.4 bits)