BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1962.p (326 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980915|ref|YP_001353545.1| LysR family transcriptional reg... 184 5e-48 gi|152980832|ref|YP_001354031.1| LysR family transcriptional reg... 181 4e-47 gi|152980272|ref|YP_001353541.1| LysR family transcriptional reg... 179 3e-46 gi|152982904|ref|YP_001352613.1| LysR family transcriptional reg... 173 1e-44 gi|152981622|ref|YP_001353551.1| LysR family transcriptional reg... 172 2e-44 >gi|152980915|ref|YP_001353545.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 300 Score = 184 bits (468), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 105/290 (36%), Positives = 172/290 (59%), Gaps = 4/290 (1%) Query: 1 MDTLQNMRVFTRVVEAGSFTQAAQQMGLTTAHVSRAVADLERHLRTRLMNRTTRRIALTE 60 MD L M+VF VV++GS + AA Q+ L+ VSR +A+LE RL++RTTR+++LT Sbjct: 1 MDRLSAMQVFVTVVDSGSQSAAADQLDLSRPVVSRYLAELEEWAGARLLHRTTRKLSLTA 60 Query: 61 AGERYLLRCQQIMSYVDEAEAEASAAYVKPSGRLRIHAMTSFGQRYVIPSISGYHKRYPD 120 AG L RC+Q++ + + + P G LRI TSFGQ ++ +++ Y K YP Sbjct: 61 AGAEMLPRCRQMLELATDMKNVVAIPEDAPQGLLRITVSTSFGQSHLAAAVADYVKLYPG 120 Query: 121 VAVELTLAQRIPDMLEEGYDVSLVLARELPDSGLIYRQLGTTFSMLCAAPAYLDKYGVPQ 180 V V++ + R+ +++EE D+++ +++EL D LI R+L S++CAAPAYL ++G P Sbjct: 121 VTVDMLVLDRVVNLVEERIDLAIRISKEL-DPNLIARRLTVCRSVVCAAPAYLHEHGKPT 179 Query: 181 QPADLLHHSCLQLVSPISPLDEWALEGPEGASVIAVKSYFQVNVAEAMLTAVREGMGIGV 240 Q L+ H+CL S W LE + +AVK N A ++L A G GI + Sbjct: 180 QAEQLVLHNCLTHSYYGS---VWLLERDKLPVNVAVKGNISANDASSLLPAALAGAGIAM 236 Query: 241 LPIYSAVDALRAGTIVRVLPQHRLQNMGVYALYPSRQYLDAKISTWVDWM 290 LP + A +R+G ++ +LP++ Q G++ +Y SR+++ A + T +D++ Sbjct: 237 LPTFLAAPYIRSGQLLPLLPEYHPQEFGLFGVYASRKHMPATLRTMLDFL 286 >gi|152980832|ref|YP_001354031.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 304 Score = 181 bits (460), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 96/300 (32%), Positives = 167/300 (55%), Gaps = 1/300 (0%) Query: 1 MDTLQNMRVFTRVVEAGSFTQAAQQMGLTTAHVSRAVADLERHLRTRLMNRTTRRIALTE 60 M+ L ++ F+ +V+ GS A+++G+T V++ +A+LE+ L RL+NRTTR +++T Sbjct: 1 MNDLSDLAFFSVLVKQGSLAAVARELGVTPPAVTKRLANLEQRLGVRLLNRTTRTMSVTH 60 Query: 61 AGERYLLRCQQIMSYVDEAEAEASAAYVKPSGRLRIHAMTSFGQRYVIPSISGYHKRYPD 120 GE YL +I++ ++E E S + P G LRI+A FG+R++ P++S + ++YP+ Sbjct: 61 EGEIYLAEGARILTEIEELERAVSRSRAVPKGLLRINATFGFGRRHIAPAVSDFIEKYPE 120 Query: 121 VAVELTLAQRIPDMLEEGYDVSLVLARELPDSGLIYRQLGTTFSMLCAAPAYLDKYGVPQ 180 + V+L L+ R +++++ +D+ + + E+PD+ +I R++ +LCAAPAY+ ++G P Sbjct: 121 IEVQLQLSDRPANLIDQAFDIGIRIG-EMPDARIIARKIAANRRLLCAAPAYIKRHGTPS 179 Query: 181 QPADLLHHSCLQLVSPISPLDEWALEGPEGASVIAVKSYFQVNVAEAMLTAVREGMGIGV 240 P DL C+ L + W L + I V+ N E L G GI + Sbjct: 180 VPRDLQKLQCIVLRENDAAYGSWHLHKGKRQESIKVRGALSSNDGETTLAWALAGHGILM 239 Query: 241 LPIYSAVDALRAGTIVRVLPQHRLQNMGVYALYPSRQYLDAKISTWVDWMHETVDKTLQE 300 + LR+G +V VL L +YA+YP R L AK++ +VD++ L E Sbjct: 240 RSQWDVAAYLRSGRLVEVLADWSLPPSDIYAVYPERLNLSAKVTAFVDFVSARFASRLSE 299 >gi|152980272|ref|YP_001353541.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 308 Score = 179 bits (453), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 94/300 (31%), Positives = 161/300 (53%), Gaps = 1/300 (0%) Query: 1 MDTLQNMRVFTRVVEAGSFTQAAQQMGLTTAHVSRAVADLERHLRTRLMNRTTRRIALTE 60 MD + ++ F+ +V+ GS AAQ++G+T VS+ +A +E LR RL+NRTTRRI+LT Sbjct: 1 MDGISDLAFFSLLVKRGSLAAAAQELGVTPPSVSKRLAGIESRLRVRLLNRTTRRISLTP 60 Query: 61 AGERYLLRCQQIMSYVDEAEAEASAAYVKPSGRLRIHAMTSFGQRYVIPSISGYHKRYPD 120 GE YL ++++ ++ E S + G L++ A FG+R++ P +S + + YP+ Sbjct: 61 EGEIYLADGTRLVAELEALEQRISGGNITAKGLLKVSATFGFGRRHITPQLSAFARLYPE 120 Query: 121 VAVELTLAQRIPDMLEEGYDVSLVLARELPDSGLIYRQLGTTFSMLCAAPAYLDKYGVPQ 180 V V+L L R +++E+G+D + ++PD+ L R++ ++CA+PAYL K+G P Sbjct: 121 VEVQLHLTDRPVNLVEQGFDADIRFG-QIPDARLSARKIADNRRLVCASPAYLQKHGTPL 179 Query: 181 QPADLLHHSCLQLVSPISPLDEWALEGPEGASVIAVKSYFQVNVAEAMLTAVREGMGIGV 240 P DL H+C+ L W + V+ N E + +G GI V Sbjct: 180 VPRDLQQHNCILLRESDEIYGSWHFSSGIKQETVKVRGALSANDGECATSWALDGQGIVV 239 Query: 241 LPIYSAVDALRAGTIVRVLPQHRLQNMGVYALYPSRQYLDAKISTWVDWMHETVDKTLQE 300 + LR+G + VL + +L +Y ++P++ +L AK VD+M + + +E Sbjct: 240 RSEWDVAPYLRSGRLRAVLEEWQLPQADIYIVFPTKNHLSAKTRALVDFMLQAFEGQRRE 299 >gi|152982904|ref|YP_001352613.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 314 Score = 173 bits (439), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 99/304 (32%), Positives = 170/304 (55%), Gaps = 2/304 (0%) Query: 2 DTLQNMRVFTRVVEAGSFTQAAQQMGLTTAHVSRAVADLERHLRTRLMNRTTRRIALTEA 61 D ++M + VV+AGSF+ AA+++G+ A VSR + +LE L+TR++ R+TR++++TEA Sbjct: 3 DRFESMALLVEVVDAGSFSGAARRLGIPLATVSRKIGELETMLKTRVLQRSTRQLSMTEA 62 Query: 62 GERYLLRCQQIMSYVDEAEAEASAAYVKPSGRLRIHAMTSFGQRYVIPSISGYHKRYPDV 121 G+ Y+ C++I+ VDEAE S Y P G L I FG+++V+P ++ + K YPD+ Sbjct: 63 GQAYVAACRRILEEVDEAERAVSGEYAAPKGDLVITTPIVFGRKHVMPVVAQFLKAYPDI 122 Query: 122 AVELTLAQRIPDMLEEGYDVSLVLARELPDSGLIYRQLGTTFSMLCAAPAYLDKYGVPQQ 181 V + LA + +LEE D+++ + ELPDS ++ ++GT ++CA+PAYL K G P++ Sbjct: 123 NVRVVLADHVVHLLEEHVDIAVRVG-ELPDSNMVAARIGTINRVMCASPAYLKKNGTPKK 181 Query: 182 PADLLHHSCLQLVSPISPLDEWALEGPEGASVIAVKSYFQVNVAEAMLTAVREGMGIGVL 241 P DL H C+ ++P W L + V S VN AEA + A +GI + Sbjct: 182 PDDLSKHQCITFDGLMAP-KLWQLCENGREINVPVFSRVVVNTAEAAIEAAESDIGITSV 240 Query: 242 PIYSAVDALRAGTIVRVLPQHRLQNMGVYALYPSRQYLDAKISTWVDWMHETVDKTLQED 301 Y + +R + VL ++ + + ++ + L K+ ++D+ + L Sbjct: 241 LCYQIAERVRDKQLKMVLREYEREAWPINLVHAGQGILPLKVRAFLDYARPRLSARLDAA 300 Query: 302 HQAL 305 H + Sbjct: 301 HHMM 304 >gi|152981622|ref|YP_001353551.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 307 Score = 172 bits (436), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/296 (34%), Positives = 173/296 (58%), Gaps = 7/296 (2%) Query: 1 MDTLQNMRVFTRVVEAGSFTQAAQQMGLTTAHVSRAVADLERHLRTRLMNRTTRRIALTE 60 M+T+ ++ F R EAGSF++AA+++GLT+A V + VA LE +L RL R+TRR+ LTE Sbjct: 1 METMSSIECFVRSAEAGSFSEAARRLGLTSAAVGKNVARLEANLSVRLFQRSTRRLTLTE 60 Query: 61 AGERYLLRCQQIMSYVDEAEAEASAAYVKPSGRLRIHAMTSFGQRYVIPSISGYHKRYPD 120 AGER+L ++ + A A ++A +P+G L+I T FG+ Y++P + + RYP Sbjct: 61 AGERFLAEVSGGLAVIQSAVANLASADGQPAGTLKISMGTGFGRHYIVPLLGDFLTRYPA 120 Query: 121 VAVELTLAQRIPDMLEEGYDVSLVLARELPDSGLIYRQLGTTFSMLCAAPAYLDKYGVPQ 180 + + R DM+ EG+D ++ ELP G++ R LG + +L AAP Y D + Sbjct: 121 ITPDWHFDNRRVDMIAEGFDAAIGGGFELP-PGVVARTLGPSHGILVAAPDYFDTHTPLA 179 Query: 181 QPADLLHHSCLQLVSP-ISPLDEWAL--EGPEGASVIAVKSYFQVNVAEAMLTAVREGMG 237 P++L H + + SP + W+L +G E A V A++ ++ +A A + G+G Sbjct: 180 SPSELGQHDGIFIRSPQTGRIRPWSLRNKGNEQAPV-AMRVRMTMSDPDAACEAAQSGLG 238 Query: 238 IGVLPIYSAVDALRAGTIVRVLPQHRLQNMGVYALY-PSRQYLDAKISTWVDWMHE 292 I ++ + +A+ L +G + RVLP + ++G +LY P+++ L AK +VD++ E Sbjct: 239 IALVSVPNALRYLESGRLKRVLPDWYV-DIGTLSLYFPAQKLLPAKTRVFVDYVVE 293 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.133 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 705,094 Number of extensions: 28446 Number of successful extensions: 177 Number of sequences better than 1.0e-08: 31 Number of HSP's gapped: 137 Number of HSP's successfully gapped: 31 Length of query: 326 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 243 Effective length of database: 914,170 Effective search space: 222143310 Effective search space used: 222143310 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)