BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1961.p (499 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980891|ref|YP_001353625.1| fusaric acid resistance protein... 371 e-104 gi|152981378|ref|YP_001352812.1| outer membrane protein, tolC-li... 239 2e-64 gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux prot... 161 1e-40 gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-li... 140 1e-34 gi|152981442|ref|YP_001353371.1| outer membrane protein, tolC-li... 137 2e-33 >gi|152980891|ref|YP_001353625.1| fusaric acid resistance protein [Janthinobacterium sp. Marseille] Length = 498 Score = 371 bits (953), Expect = e-104, Method: Compositional matrix adjust. Identities = 203/478 (42%), Positives = 295/478 (61%), Gaps = 11/478 (2%) Query: 2 KRIAFSTLPAVTVIALSLTMAGCADQGGIKPQAQVRDVAVLDAGQAIRQTASE--AGWPQ 59 +RIA+ + +T + ++ CAD G IKPQAQ D L +G I Q A A WPQ Sbjct: 3 RRIAYLGIACMTAL-----LSACADMGNIKPQAQRMDANALGSGTVISQAAVNDAAQWPQ 57 Query: 60 RTWWQVYGDTQLDQLVKRAVAGNPSMAVAAARVRQAQSMAVVAHAGELPNAQLDVAVGRK 119 + WW YGD QLD L+ A++ +P++ +A ARVRQAQ+ A +A + LPN ++ R+ Sbjct: 58 QQWWHAYGDAQLDALIATALSDSPNLHIAEARVRQAQAYAGMAESATLPNVSASTSMTRQ 117 Query: 120 DWSDNVYYGAAFRDKLTWNNTATLGLSYNVDLWDRNKNTTLRAQDEMHAVAADARAAQLD 179 +S + + W N + +Y++DLW R++ A DE+ +A+++ A+L Sbjct: 118 LFSAHDFIPPPEAGNYAWYNRVAVEATYDLDLWGRHRQELAAALDEVKVSSAESQMARLA 177 Query: 180 LEGNVVRTYVQLALQYGLLDNTEAMLKEEQKILDLARRRFNGGLGTQLDITQAEAPLPET 239 LE N+VR+YVQL+LQ+ L D TE L +K L + R+R GL T++D+TQ EA +P Sbjct: 178 LENNIVRSYVQLSLQFALKDITEDTLAHREKGLQVMRKRLAAGLATEMDVTQLEAAIPPL 237 Query: 240 RRQIEALQENIALIRNQLAALLGEGPGAADGVTRPGMALHTA--IGLPSALPADLVGRRP 297 QIE E I ++RNQLAAL G+GP + +TRP +AL + LP+ LPADL+GRRP Sbjct: 238 HIQIEQYDEAIIVLRNQLAALAGKGPAEGEKITRPTLALDNNAWLRLPAVLPADLIGRRP 297 Query: 298 DISAARWRVEAAAKGISVAKAAFYPNLNLLAGIGPAAAGGGLFSFLSAPNLQTTYGPAIS 357 D++A RW VEAA K I AKAAFYP++NL+A IG G G +FL + GPAIS Sbjct: 298 DVAARRWGVEAAGKQIEAAKAAFYPDINLMAFIG--FQGIGFSNFLKGDSSIRGVGPAIS 355 Query: 358 LPIFEGGRLRGQLGAASAGYDIEVEHYNALLSQALKGISDQVVTLQSVARQQQQAQESVR 417 LPIF+GGRLR LGA +A YDI VE YN L AL+ +++ +V QS+ +Q+ ++ Sbjct: 356 LPIFDGGRLRSNLGAHTAAYDIAVESYNGTLIHALESVANTLVVAQSLQQQKNLNDGALV 415 Query: 418 AAQKSVDIATRAYQRGLTDYLNVLHAQTQWLRQQQIVQQLQAQRLAAYAALQTALGGG 475 A K+ +A++ + G+TD+L +L+++ L Q+Q Q+ A+ L ++AAL ALGGG Sbjct: 416 TASKARTLASKGFAAGMTDFLVLLNSEVALLTQEQQRAQITARMLESHAALMLALGGG 473 >gi|152981378|ref|YP_001352812.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 501 Score = 239 bits (611), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 173/466 (37%), Positives = 244/466 (52%), Gaps = 5/466 (1%) Query: 12 VTVIALSLTMAGCADQGGIKPQAQVRDVAVLDAGQAIRQTASEAGWPQRTWWQVYGDTQL 71 +T ++ ++ CA GI+P A ++ + + ++ Q + WP +W Q G L Sbjct: 17 LTACCAAVLLSACASFKGIEPTASLKQSSDYTSTASLPQQGGQ--WPDASWAQAIGGAPL 74 Query: 72 DQLVKRAVAGNPSMAVAAARVRQAQSMAVVAHAGELPNAQLDVAVGRKDWSDNVYYGAAF 131 LV A+AGNP++ VAAARV AQ+ A A A P+ + + + +++N Sbjct: 75 QALVDEAIAGNPNLQVAAARVAGAQAAADAAGANARPSWSANASSTYQRYTENGIIPPPL 134 Query: 132 RDKLTWNNTATLGLSYNVDLWDRNKNTTLRAQDEMHAVAADARAAQLDLEGNVVRTYVQL 191 + +N TL SY+ D W ++ A A A+ A+L + V R +VQL Sbjct: 135 GGEYKSDNQLTLNFSYDFDFWGKHAAELRSALSAGKAAQAEQYNARLVISTAVARAWVQL 194 Query: 192 ALQYGLLDNTEAMLKEEQKILDLARRRFNGGLGTQLDITQAEAPLPETRRQIEALQENIA 251 A QYG LD + LK +I L + RF GLGTQ + Q L R + L E IA Sbjct: 195 ARQYGQLDLNQEQLKASAEIQRLTQLRFKVGLGTQSENQQVTQSLASLRAENAQLNEAIA 254 Query: 252 LIRNQLAALLGEGPGAADGVTRPGMALHTAIGLPSALPADLVGRRPDISAARWRVEAAAK 311 L RNQLAALLG+GP + RP + TAI LP ALP L+GRRPDI AARW VEAA Sbjct: 255 LTRNQLAALLGKGPDRGLQIERPALPSETAIALPDALPLGLIGRRPDIVAARWNVEAAQG 314 Query: 312 GISVAKAAFYPNLNLLAGIGPAAAGGGLFSFLSAPNLQTTYGPAISLPIFEGGRLRGQLG 371 I AK FYPN+N++A G ++ GL + L + + GPAI LPIF+ LR L Sbjct: 315 DIDAAKTLFYPNVNIMAFAGFSSI--GLNNLLKSSSGIVGVGPAIYLPIFDRS-LRANLK 371 Query: 372 AASAGYDIEVEHYNALLSQALKGISDQVVTLQSVARQQQQAQESVRAAQKSVDIATRAYQ 431 A YD + YN L++AL ++DQV +L++ Q +Q + +A+ S +A + + Sbjct: 372 GRVASYDGLIATYNQTLTEALHDVADQVQSLRAATLQSEQQHLATQASSNSFQLAQQRER 431 Query: 432 RGLTDYLNVLHAQTQWLRQQQIVQQLQAQRLAAYAALQTALGGGMD 477 G T+ L VL AQ L Q++I QA+R L ALGGG D Sbjct: 432 VGTTNMLPVLSAQMTLLSQRRIDLDTQARRSDLRITLIKALGGGFD 477 >gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux protein [Janthinobacterium sp. Marseille] Length = 485 Score = 161 bits (407), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 142/483 (29%), Positives = 233/483 (48%), Gaps = 38/483 (7%) Query: 11 AVTVIALSLTMAGCADQGGIKPQAQVRDVAVLDAGQAIRQTAS------EAGWP------ 58 A++ + +L +AGC+ +P +++ LD A R+ ++ + W Sbjct: 7 ALSTMVAALVLAGCSTA---RPPEELK----LDLPNAYREQSTVKANELDGAWKLAAPAD 59 Query: 59 ---QRTWWQVYGDTQLDQLVKRAVAGNPSMAVAAARVRQAQSMAVVAHAGELPNAQLDVA 115 + WW+V+GD QL L+ A N ++A+A ARV+ A+++A V A Q+D Sbjct: 60 NKDRGAWWKVFGDEQLSNLIVEAGNSNLNLAIALARVKDARAIAGVVDADR--GVQVDAG 117 Query: 116 VGRKDWSDNVYYGAAFRDKLTWNNTATLGLSYNVDLWDRNKNTTLRAQDEMHAVAADARA 175 VG + +R A L +Y VDL+ R + + A+ + A R+ Sbjct: 118 VGPTRSGNAQGASTQYR--------APLSFAYEVDLFGRLSDASRAARLDAEGQEAAYRS 169 Query: 176 AQLDLEGNVVRTYVQLALQYGLLDNTEAMLKEEQKILDLARRRFNGGLGTQLDITQAEAP 235 L L+ +V + Y + +D E + Q+ LDL +RRF+ G ++LD+ QA+ Sbjct: 170 VLLALQSDVAQQYFTIRSLDSEVDVLEKTVALRQEALDLTQRRFDAGDTSELDVAQAKTE 229 Query: 236 LPETRRQIEALQENIALIRNQLAALLGEGPGAADGVTRPGMALHTAI-GLPSALPADLVG 294 T ++E ++ A + LA LLG+ P T P L A+ +PS LP+DL+ Sbjct: 230 WATTSAELEGVKRQRAQRDHALAILLGKAPAE---FTLPVAPLAAAVVTVPSGLPSDLLE 286 Query: 295 RRPDISAARWRVEAAAKGISVAKAAFYPNLNLLAGIG-PAAAGGGLFSFLSAP-NLQTTY 352 RRPDI+ A+ ++ A++ I AKAAF+P L L G + LF + S L Sbjct: 287 RRPDIAQAQRQLAASSARIGAAKAAFFPKLLLTGSAGYESNELRDLFKWSSRSWMLGPVV 346 Query: 353 GPAISLPIFEGGRLRGQLGAASAGYDIEVEHYNALLSQALKGISDQVVTLQSVARQQQQA 412 G +S+P+F+GGR + L A A Y+ V +Y + + + D + L+++ RQ Q Sbjct: 347 GTILSMPLFDGGRNQSNLARADANYEALVANYRLQVLVGFQDVEDNLSALRTLDRQLQFE 406 Query: 413 QESVRAAQKSVDIATRAYQRGLTDYLNVLHAQTQWLRQQQIVQQLQAQRLAAYAALQTAL 472 +++V +AQ + +A Y+ G Y V+ AQ L Q+ + QR A L AL Sbjct: 407 EQAVNSAQLASRLADTRYRYGSASYFEVIDAQRSSLSSQRSKIRSTGQRAVASVGLIRAL 466 Query: 473 GGG 475 GGG Sbjct: 467 GGG 469 >gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 475 Score = 140 bits (354), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 137/478 (28%), Positives = 219/478 (45%), Gaps = 26/478 (5%) Query: 10 PAVTVIALSLTMAGCADQGGIKPQAQVRDVAVLDAGQAIRQTASEAGWP---------QR 60 PA + L + GCA + P Q D V A + +EAGW + Sbjct: 7 PAFASLLALLILGGCA----VGPDYQRPDAPVAQAWK------TEAGWQASNPRDGELKG 56 Query: 61 TWWQVYGDTQLDQLVKRAVAGNPSMAVAAARVRQAQSMAVVAHAGELPNAQLDVAVGRKD 120 WW+++ D +L+ L ++A+ +M +A ARV QA++ A VA++ P R Sbjct: 57 AWWEIFRDAELNALQEQALKNGQTMVIAQARVDQARAQANVANSSFFPKIGAQAGSARNR 116 Query: 121 WSDN---VYYGAAFRDKLTWNNTATLGLSYNVDLWDRNKNTTLRAQDEMHAVAADARAAQ 177 S Y + + + A +SY +DL+ R + A AD + Sbjct: 117 TSAERPLTNYNSQNSSVVQNDFNAAFTVSYELDLFGRVRRQAEGAGATAQQAQADFENTR 176 Query: 178 LDLEGNVVRTYVQLALQYGLLDNTEAMLKEEQKILDLARRRFNGGLGTQLDITQAEAPLP 237 L L + Y+ L +D + L + K LD R G + LD+ Q + Sbjct: 177 LVLTAELAADYLVLRQTDAEIDVLQQTLGAQTKALDFISARHELGAASGLDLNQQQGLTA 236 Query: 238 ETRRQIEALQENIALIRNQLAALLGEGPGAADGVTRPGMALHTAIGLPSALPADLVGRRP 297 T+ Q+ LQ+ A +N +A L+G A D +A+ TA +P PA L+ RRP Sbjct: 237 ATQTQLTLLQDQRARYQNAIATLVG--VPAPDFKLPVNLAVTTAPAIPLTAPAALLERRP 294 Query: 298 DISAARWRVEAAAKGISVAKAAFYPNLNLLAGIGPAAAGGGLFSFLSAPNLQTTYGPAIS 357 DI+AA + AA I VA++A++P+L L G A L + SAP L + G + + Sbjct: 295 DIAAAERAMAAANAQIGVARSAYFPSLGLSGLYGSDA--NQLSNLFSAPALLWSIGVSAT 352 Query: 358 LPIFEGGRLRGQLGAASAGYDIEVEHYNALLSQALKGISDQVVTLQSVARQQQQAQESVR 417 IF+GGR + A AGY + +Y + A++ + D + + ++A+ A+ + Sbjct: 353 QMIFDGGRTSANVDFAKAGYQQALGNYRQSVLVAMQEVQDGLNSDVALAQALTSAKVAAD 412 Query: 418 AAQKSVDIATRAYQRGLTDYLNVLHAQTQWLRQQQIVQQLQAQRLAAYAALQTALGGG 475 +A +S+ ++T YQ G+T L V+ AQ +L ++ QL QRL L ALGGG Sbjct: 413 SADRSLGLSTDRYQSGITTNLEVVVAQQTFLSYKRQEVQLHGQRLVNTVKLIKALGGG 470 >gi|152981442|ref|YP_001353371.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 480 Score = 137 bits (344), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 130/425 (30%), Positives = 206/425 (48%), Gaps = 9/425 (2%) Query: 62 WWQVYGDTQLDQLVKRAVAGNPSMAVAAARVRQAQSMAVVAHAGELPNAQLDVAVGRKDW 121 WW ++ D L+ L R V GN ++ A+V A++ +++ LP + +A R Sbjct: 54 WWTLFQDPVLNDLEGRLVVGNENLKSLVAQVAAARAAVAASYSARLPTLSVGLAGSRDSN 113 Query: 122 SDNVYYGAAFRDKLTWNNTATLG-LSYNVDLWDRNKNTTLRAQDEMHAVAADARAAQLDL 180 + ++ NN + G S+ VDLW R T AQ + A D AA+L Sbjct: 114 PSSTTRSTTVQNPS--NNVSLSGNASWEVDLWGRLAQATTGAQANLQASVDDLAAARLSA 171 Query: 181 EGNVVRTYVQLALQYGLLDNTEAMLKEEQKILDLARRRFNGGLGTQLDITQAEAPLPETR 240 + + +TY L L E + Q+ LDL + R+ GG+ ++D+ QA+ L + Sbjct: 172 QATLAQTYFSLRTTDAQLSVLERSVAAYQRSLDLTQFRYGGGVVARVDVLQAQTQLKAAQ 231 Query: 241 RQIEALQENIALIRNQLAALLGEGPGAADGVTRPGMALHTAIGLPSALPADLVGRRPDIS 300 Q+ A++ + +A LLG P A +L A +P LP L+ RRPDI+ Sbjct: 232 AQLAEAIAQRAILEHAIAVLLGVPPSAL--ALERNASLPQAPLVPQMLPTTLLERRPDIA 289 Query: 301 AARWRVEAAAKGISVAKAAFYPNLNLLAGIGPAAAGGGLFSFLSAPNLQTTYGPAISLPI 360 AA+ RV AA I VA AA++P+L L AG G L + +SAPNL + G +++ I Sbjct: 290 AAQRRVAAAYAQIGVAHAAYFPSLVLSAGGG--YQNSSLSNLISAPNLFWSLGASVAQAI 347 Query: 361 FEGGRLRGQLGAASAGYDIEVEHYNALLSQALKGISDQVVTLQSVARQQQQAQESVRAAQ 420 F+GG+ + A + D Y + AL+ + D ++ + ++ Q QES+ AAQ Sbjct: 348 FDGGQRQLASAQAQSVADQATSAYRQTVLTALQEVEDNLILAAQLQQEAQLQQESLEAAQ 407 Query: 421 KSVDIATRAYQRGLTDYLNVLHAQTQWLRQQQIVQQLQAQRLAAYAALQTALGGGMDNGP 480 ++++I Y+ G YLNV AQT L + + Q +RLAA L + G + P Sbjct: 408 RTLEITLDQYRAGTVSYLNVAIAQTTALVSENNLLSTQNRRLAATNILLKNIAGRWE--P 465 Query: 481 ETPSA 485 + P A Sbjct: 466 DNPDA 470 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.130 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 852,887 Number of extensions: 28155 Number of successful extensions: 176 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 145 Number of HSP's successfully gapped: 12 Length of query: 499 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 412 Effective length of database: 899,382 Effective search space: 370545384 Effective search space used: 370545384 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)