BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1958.p (324 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980920|ref|YP_001353621.1| hypothetical protein mma_1931 [... 298 4e-82 gi|152979788|ref|YP_001352813.1| multidrug resistance protein A,... 94 1e-20 gi|152981910|ref|YP_001352754.1| multidrug efflux system transme... 67 2e-12 gi|152980288|ref|YP_001353254.1| multidrug efflux system transme... 55 6e-09 >gi|152980920|ref|YP_001353621.1| hypothetical protein mma_1931 [Janthinobacterium sp. Marseille] Length = 289 Score = 298 bits (762), Expect = 4e-82, Method: Compositional matrix adjust. Identities = 157/315 (49%), Positives = 212/315 (67%), Gaps = 29/315 (9%) Query: 1 MPVKSIFRVLITLVIFLVAILLAWSLWQHYMHSPWTRDGRVRADVVNIAPDVSGQVVALP 60 M + R +IT V L+AILL LW M+SPWTRDGRV+AD+++IAPDVSG V + Sbjct: 1 MRTSAYLRYIITGVFLLLAILLGKYLWDDNMYSPWTRDGRVKADILHIAPDVSGIVTNVA 60 Query: 61 VRDNQLVKKGDLLMEIDPARYTLALQQAEAAVTARKADLEVRKAEVEARRADLNMRRAQA 120 VRDNQ V KGD+L ID +RY L QAEA + A++A+ MR +A Sbjct: 61 VRDNQFVHKGDILFSIDKSRYAHVLTQAEATLAAQQAEK--------------GMRSKEA 106 Query: 121 RRRADVDALVVSREAREDAGSQVTASQAQLEAAQAQLQGAQAQYQAALSQRDTAKLNLER 180 RR+ +DA +V+ E RE A S + + A+ +AA A RDTA+LNLER Sbjct: 107 ARRSTLDASIVTSENREAAASLSSIAGAKYQAAAAA--------------RDTAQLNLER 152 Query: 181 TKVFSPVDGYITNLNVRRGDYATAGAAKIAVIDSHSFWVYAYFEETKLPLLSIGDHAKIQ 240 T V +PVDGY+TNL+V GD+ATAG ++AVIDS+S++V YFEETKLP L + D +I+ Sbjct: 153 TDVRAPVDGYVTNLHVYAGDFATAGVPQLAVIDSNSYYVSGYFEETKLPYLKVNDKVEIR 212 Query: 241 LINGA-TMEGHVDSIARGIYDRDNPQSRELTADVNPTFNWVRLAQRIPVRIHLDKVPENV 299 L++G ++GH++SI+RGI DRD REL AD+NPTFNWVRLAQR+PVRI +D++ +N Sbjct: 213 LMSGGPALQGHIESISRGITDRDASTGRELLADINPTFNWVRLAQRVPVRIRIDELDKNH 272 Query: 300 LLASGLTCTVVLEPG 314 L +G+TCTV+++PG Sbjct: 273 QLVAGMTCTVIVQPG 287 >gi|152979788|ref|YP_001352813.1| multidrug resistance protein A, emrA [Janthinobacterium sp. Marseille] Length = 399 Score = 94.0 bits (232), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 88/296 (29%), Positives = 140/296 (47%), Gaps = 37/296 (12%) Query: 24 WSLWQHYMHSPWTRDGRVRADVVNIAPDVSGQVVALPVRDNQLVKKGDLLMEIDPARYTL 83 W+++ + T D V +VV + P V G V+A+ D +LV+ G L+++D + + Sbjct: 41 WAIYARHFED--TDDAYVAGNVVQVTPQVGGTVIAIHADDTELVEAGKPLVDLDHSDAKV 98 Query: 84 ALQQAEA--AVTARKADLEVRK---------AEVEARRADLNMRRAQARRRADVDAL-VV 131 AL QAEA A T R EVR A V R AD+ R RR ++ V Sbjct: 99 ALDQAEAQLAQTVR----EVRTLFVNNGALGAAVTQRVADVARARDDLARRQELSGTGAV 154 Query: 132 SREAREDAGSQVTASQAQLEAAQAQLQGAQA-----------QYQAALSQRDTAKLNLER 180 ++E E A + + A+++ L+AA+ QL QA Q A +Q A L L R Sbjct: 155 AKEDLEHARTTLIAAESALQAARDQLTSNQALTDGTTVAQHPNVQRAAAQVQAAYLALSR 214 Query: 181 TKVFSPVDGYITNLNVRRGDYATAGAAKIAVIDSHSFWVYAYFEETKLPLLSIGDHAKIQ 240 + +P+ GYI +V+ G G ++V+ ++ WV A F+E ++ + IG ++ Sbjct: 215 NTLLAPITGYIAKRSVQVGQRVAPGTPLLSVVPLNALWVDANFKEVQVAKMRIGQPVELY 274 Query: 241 ---LINGATMEGHVDSIARGIYDRDNPQSRELTADVNPTFNWVRLAQRIPVRIHLD 293 +G G V ++ G + L N + NW+++ QRIPVRI LD Sbjct: 275 SDVYGSGVKYHGKVAGLSAG-----TGAAFALLPTQNASGNWIKVVQRIPVRITLD 325 >gi|152981910|ref|YP_001352754.1| multidrug efflux system transmembrane protein [Janthinobacterium sp. Marseille] Length = 570 Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 36/213 (16%) Query: 8 RVLITLVIFLVAILLAWSLWQHYMHSPWTRD-------------------GRVRA-DVVN 47 R LI +I L+A W W+ + R+ G V+ + V+ Sbjct: 18 RALIAFLIVLLAAGGYWG-WKKFYGKKDPREIYQVAEVQRGDIQDLVTATGTVQPLEYVD 76 Query: 48 IAPDVSGQVVALPVRDNQLVKKGDLLMEIDPARYTLALQQAEAAVTARKADLEVRKAEVE 107 + VSGQ+ L + +VK+GDLL EIDP + A V AR+A L + A ++ Sbjct: 77 VGAQVSGQLKKLYIEVGSVVKEGDLLAEIDPTVFL-------ATVDARRAGLRNQLATMK 129 Query: 108 ARRADLNMRRAQARRRADVDAL-VVSREAREDAGSQVTASQAQLEAAQAQLQGAQAQYQA 166 R + L + Q R+ ++ A + E+ + A + + +++AQ++A QAQ++ Q+ +A Sbjct: 130 DRESQLALATLQYNRQKNLMAADATTTESLQTAEATLRSAKAQIDALQAQIEQTQSTLRA 189 Query: 167 ALSQRDTAKLNLERTKVFSPVDGYITNLNVRRG 199 D A LN K+++P+DG + +L R+G Sbjct: 190 -----DEANLNY--AKIYAPMDGTVVSLTARQG 215 >gi|152980288|ref|YP_001353254.1| multidrug efflux system transmembrane protein [Janthinobacterium sp. Marseille] Length = 408 Score = 55.1 bits (131), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 65/189 (34%), Positives = 90/189 (47%), Gaps = 31/189 (16%) Query: 39 GRVRA-DVVNIAPDVSGQVVALPVRDNQLVKKGDLLMEIDPARYTLALQQAEAAVTARKA 97 GRV A + V I P +SG + A+ +D QLVKKG LL IDP Y L +AEAA +A Sbjct: 66 GRVEAVERVEIRPRISGTIDAVHFQDGQLVKKGALLFTIDPRPYKAELARAEAARAGAQA 125 Query: 98 DLEVRKAEVEARRADLNMRRAQARRRADVDALVVSREAREDAGSQVTASQAQLEAAQAQL 157 L + K E+E R L RA A+R D RE+A + Sbjct: 126 RLALAKTELE-RTKRLLEERAVAQRELDT---------RENA-----------------M 158 Query: 158 QGAQAQYQAALSQRDTAKLNLERTKVFSPVDGYITNLNVRRGDYATAG--AAKIAVIDSH 215 Q A A +A + TA+LNL+ T++ +PV G ++ + G+ G A + + S Sbjct: 159 QEADANLKATDAAVLTARLNLQYTEITAPVSGRVSRAEITVGNLVATGPTAPTLTTVVSV 218 Query: 216 SFWVYAYFE 224 S VY FE Sbjct: 219 S-PVYVNFE 226 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.131 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 637,305 Number of extensions: 23565 Number of successful extensions: 126 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 126 Number of HSP's successfully gapped: 5 Length of query: 324 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 241 Effective length of database: 914,170 Effective search space: 220314970 Effective search space used: 220314970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)