BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1953.p
         (151 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980396|ref|YP_001353006.1| molybdenum cofactor biosynthesi...   249   6e-68

>gi|152980396|ref|YP_001353006.1| molybdenum cofactor biosynthesis
           protein E [Janthinobacterium sp. Marseille]
          Length = 157

 Score =  249 bits (635), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 115/150 (76%), Positives = 134/150 (89%)

Query: 1   MPVRVQTADFDLSTEVAQLRLSNPRVGAVVSFVGTVRDLNEGAAVSAMELEHYPVMTERA 60
           MPVRVQT +FD+S EVA LR  +P+VGAVV+F+GTVRD+N+G++V+ MELEHYP MTE+A
Sbjct: 1   MPVRVQTENFDVSHEVAALRAHSPQVGAVVTFIGTVRDMNDGSSVAEMELEHYPGMTEKA 60

Query: 61  LEQIVQQAKVRWPICEALVIHRVGPLQPCEQIVLVAVTSPHRGEAFAACEFIMDYLKTQA 120
           L+ IV+QAK RWPI +ALVIHR+GPL P EQIVLVAVTS HRGEAF+ACEFI+DYLKT A
Sbjct: 61  LQNIVEQAKARWPIFDALVIHRIGPLLPLEQIVLVAVTSAHRGEAFSACEFIIDYLKTDA 120

Query: 121 PFWKKEQTPQGARWVDARESDDTALAKWTQ 150
           PFWKKEQTPQGARWVDAR +DDTALAKW Q
Sbjct: 121 PFWKKEQTPQGARWVDARTTDDTALAKWKQ 150


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.131    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 325,209
Number of extensions: 10910
Number of successful extensions: 27
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 151
Length of database: 1,221,021
Length adjustment: 75
Effective length of query: 76
Effective length of database: 943,746
Effective search space: 71724696
Effective search space used: 71724696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)