BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1949.p
         (427 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980636|ref|YP_001353004.1| molybdopterin biosynthesis prot...   568   e-163
gi|152981092|ref|YP_001353669.1| molybdopterin biosynthesis prot...   223   2e-59

>gi|152980636|ref|YP_001353004.1| molybdopterin biosynthesis protein
           [Janthinobacterium sp. Marseille]
          Length = 413

 Score =  568 bits (1465), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 279/414 (67%), Positives = 334/414 (80%), Gaps = 10/414 (2%)

Query: 18  PMQSVSQALDILLAAAVPVEQSETIDTLDACGRVLAAPVQAHINVPGMDNSQMDGYAVRA 77
           PM SV++AL  LL++A  + ++ET+ TLDA GRVLA   ++ +NVP +DN+ MDGYAVRA
Sbjct: 6   PMLSVAEALAFLLSSAKKITETETLATLDANGRVLAVAQESQLNVPPVDNTSMDGYAVRA 65

Query: 78  VDCVSGDTRLRVSQRIPAGHVGQALEPGTAARIFTGAMMPEGADAVVMQEACEA----DG 133
            DCVSG+  LRVSQRIPAGHVGQ LE G AARIFTGAM+P+GADAVVMQE C A    DG
Sbjct: 66  ADCVSGEAVLRVSQRIPAGHVGQPLEAGCAARIFTGAMIPQGADAVVMQEVCVASKGADG 125

Query: 134 EHVVIRHVPKAGEWVRTIGEDIRQGSIILAAGTRLRAQELGLAASIGQAQLQVVRPVRVA 193
           + V ++H P +GEW+R  GEDIR GS IL AG RLRAQELGLAAS+G AQ+ VVR +RVA
Sbjct: 126 DLVTVKHNPASGEWIRRAGEDIRAGSTILTAGQRLRAQELGLAASVGLAQIPVVRKLRVA 185

Query: 194 VFFTGDELTMPGQPLKPGGIYNSNRFLLRGLLQQLGCQVSDYGIVPDSLEATRQTLREAA 253
           VFFTGDEL MPG+ LKPG IYNSNRF LRGLL+ LGC++SD+GIVPD+L ATR TLR AA
Sbjct: 186 VFFTGDELAMPGEVLKPGAIYNSNRFTLRGLLENLGCEISDFGIVPDTLAATRDTLRRAA 245

Query: 254 REHDLIITSGGVSVGEEDHVKPAVQAEGRIKLWQIAMKPGKPLAFGQVRRGQGVGEGGSE 313
            E+DLIITSGGVSVGEEDH+KPAV+AEG + +WQIA+KPGKPLAFG+V R    G     
Sbjct: 246 AENDLIITSGGVSVGEEDHIKPAVEAEGHLNMWQIAVKPGKPLAFGEVNRSAKDG----T 301

Query: 314 AFFLGLPGNPVASFVTFLLFVRPFLLRLQGLPREAVLPQPVAMRADFDWPRADRRQEFLR 373
           A+FLGLPGNPV+SFVTF+LFVRPF+LRLQG+  E V P+   MRADF+  +AD+R EFLR
Sbjct: 302 AYFLGLPGNPVSSFVTFMLFVRPFILRLQGV--ENVAPKAYPMRADFNLNKADKRNEFLR 359

Query: 374 VRRNAQGGLDLFPSQGSAVLTSTAWADGLIDNPPGQTIAAGDMVQFLAFDHLLH 427
            + N QGGLDLFP+Q S VLTST W DGLID+PPG+TIAAGD V+F++F  L++
Sbjct: 360 AKINDQGGLDLFPNQSSGVLTSTVWGDGLIDHPPGKTIAAGDTVRFISFSDLMY 413


>gi|152981092|ref|YP_001353669.1| molybdopterin biosynthesis protein
           MoeA [Janthinobacterium sp. Marseille]
          Length = 460

 Score =  223 bits (567), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/403 (36%), Positives = 211/403 (52%), Gaps = 20/403 (4%)

Query: 35  PVEQSETIDTLDACGRVLAAPVQAHINVPGMDNSQMDGYAVRAVDC-VSGDTRLRVSQRI 93
           P+   E +    A  RVLAA + + INVP  DNS MDGYA R  +     D +L++   +
Sbjct: 67  PINAIEKVAIRSALDRVLAADIVSPINVPSHDNSAMDGYAFRGSELQKEQDLQLKI---V 123

Query: 94  PAGHVGQALE----PGTAARIFTGAMMPEGADAVVMQEACEADGEH--VVIRHVPKAGEW 147
              + G+A E     G   RI TGA+MP   D V+ QE    + E    +   V + G+ 
Sbjct: 124 GTAYAGRAYEGSVGSGECVRIMTGAVMPVECDTVIPQEFTRDESEQGMTIPAGVVRTGDN 183

Query: 148 VRTIGEDIRQGSIILAAGTRLRAQELGLAASIGQAQLQVVRPVRVAVFFTGDELTMPGQP 207
            R  GED+  G+  L  G  LR  +LGL AS+G  ++ V R +RVA F TGDEL   G+ 
Sbjct: 184 RRLKGEDLAIGTPALQKGRILRPADLGLLASLGIGEVPVQRRLRVAFFSTGDELRSIGET 243

Query: 208 LKPGGIYNSNRFLLRGLLQQLGCQVSDYGIVPDSLEATRQTLREAAREHDLIITSGGVSV 267
           L  G +Y+SNR+ L G+L +LGC + D G++ D   A     R A    D IITSGGVSV
Sbjct: 244 LDEGCVYDSNRYTLHGMLTRLGCDIVDMGVIKDDPAALEAAFRTACENADAIITSGGVSV 303

Query: 268 GEEDHVKPAVQAEGRIKLWQIAMKPGKPLAFGQVRRGQGVGEGGSEAFFLGLPGNPVASF 327
           G  D+ K  +   G +  W+I M+PG+P+AFG+++        G EA+  GLPGNPVA  
Sbjct: 304 GAADYTKQMMAELGDVTFWKIGMRPGRPMAFGKIQ------SHGKEAYLFGLPGNPVAVM 357

Query: 328 VTFLLFVRPFLLRLQGLPREAVLP--QPVAMRADFDWP-RADRRQEFLRVRRNAQGGLDL 384
           VTF    R  LL + G       P  + V+  A    P R + ++  L +  +    + +
Sbjct: 358 VTFYFLARQALLHMMGASAVDAPPMLRVVSKAAIRKRPGRTEYQRGILSLNSDGVQEVRI 417

Query: 385 FPSQGSAVLTSTAWADGLIDNPPGQT-IAAGDMVQFLAFDHLL 426
             SQGS VL S + A+ ++     +  + AGD+V  + F+ L+
Sbjct: 418 TGSQGSGVLRSMSEANCMVVLEHDRAEVKAGDLVNVILFEGLI 460


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 951,239
Number of extensions: 36954
Number of successful extensions: 140
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 2
Length of query: 427
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 341
Effective length of database: 903,079
Effective search space: 307949939
Effective search space used: 307949939
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)