BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1948.p
         (486 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980046|ref|YP_001353003.1| threonine synthase [Janthinobac...   855   0.0  

>gi|152980046|ref|YP_001353003.1| threonine synthase
           [Janthinobacterium sp. Marseille]
          Length = 505

 Score =  855 bits (2209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/486 (82%), Positives = 442/486 (90%)

Query: 1   MHYVSTRGHAATPSFSDILLGGLAPDGGLYLPAQYPQVSGAELDQWRKLSYADLAFEVLK 60
           M Y+STRG A   SFS+ILLGGLAPDGGLYLP  YPQVS AELD WR LSYADLA+EVL+
Sbjct: 20  MQYISTRGLAPALSFSEILLGGLAPDGGLYLPETYPQVSDAELDAWRTLSYADLAYEVLR 79

Query: 61  KFATDIPDADLKALAHKTYTADVYRNTRAGEDASQITPLRTLQEQDGKKLVLQSLSNGPT 120
           KFATDIPDADLKAL HKTYTADVYRN R GE+A++ITPLRT++E++G KLVLQ+LSNGPT
Sbjct: 80  KFATDIPDADLKALVHKTYTADVYRNVRHGEEAARITPLRTVEEKNGSKLVLQALSNGPT 139

Query: 121 LAFKDMAMQLLGNLFEYALAKKGAELNIVGATSGDTGSAAEYAMRGKQGIRVFMLSPHKK 180
           LAFKDMAMQLLGNLFEY LAK  AELNI GATSGDTGSAAEYAMRGK+GIRVFMLSPHKK
Sbjct: 140 LAFKDMAMQLLGNLFEYTLAKNHAELNIFGATSGDTGSAAEYAMRGKKGIRVFMLSPHKK 199

Query: 181 MSAFQTAQMFSLQDPNIFNLAVEGVFDDCQDIVKAISNDLEYKAAKKIGTVNSINWARVV 240
           MSAFQTAQMFSLQDPNIFN+AVEGVFDDCQD+VKA+SND  +K  +KIGTVNSINWARVV
Sbjct: 200 MSAFQTAQMFSLQDPNIFNIAVEGVFDDCQDMVKAVSNDHGFKQQQKIGTVNSINWARVV 259

Query: 241 AQVVYYFRGYLAATTSNEQKVSFTVPSGNFGNICAGHIARMMGLPIDKLVVATNENDVLD 300
           AQV+YYFRGYL+ATTSNEQKVSFTVPSGNFGNICAGHIARMMGLPIDKLV ATNENDVLD
Sbjct: 260 AQVIYYFRGYLSATTSNEQKVSFTVPSGNFGNICAGHIARMMGLPIDKLVAATNENDVLD 319

Query: 301 EFFRTGIYRVRKSAETYHTSSPSMDISKASNFERFIYDLLGRDSTRVKALFHKVETEGGF 360
           EFFRTG+YRVRKSAETYHT+SPSMDISKASNFERF+YDLLGRD  RV+ALF KVET GGF
Sbjct: 320 EFFRTGVYRVRKSAETYHTTSPSMDISKASNFERFVYDLLGRDGDRVRALFQKVETHGGF 379

Query: 361 DLSGQAGSDGNEFASVIQYGFASGKSTHADRLETIRFAEKTYGITVDTHTADGIKVAREH 420
           DLSG+ GSDG+EF  + ++GFASGKSTH+DR+ TIR  +  Y + +DTHTADG+KVAREH
Sbjct: 380 DLSGKPGSDGDEFKDIAKFGFASGKSTHSDRVATIRDLQNKYELMIDTHTADGVKVAREH 439

Query: 421 LAPGVTMIVLETALPAKFNETIREALGRDADRPAGFENIEALPQRFEVMPADAARVKAYV 480
           + PGVTMIVLETALPAKFNETIREALGRDADRPAGFENIE LPQRFEVMPAD  ++K ++
Sbjct: 440 MTPGVTMIVLETALPAKFNETIREALGRDADRPAGFENIEDLPQRFEVMPADVEQMKTFI 499

Query: 481 AEHTGL 486
           A HTGL
Sbjct: 500 ARHTGL 505


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,109,874
Number of extensions: 45859
Number of successful extensions: 134
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 399
Effective length of database: 899,382
Effective search space: 358853418
Effective search space used: 358853418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)