BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1946.p
         (436 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979984|ref|YP_001353002.1| homoserine dehydrogenase [Janth...   733   0.0  

>gi|152979984|ref|YP_001353002.1| homoserine dehydrogenase
           [Janthinobacterium sp. Marseille]
          Length = 436

 Score =  733 bits (1892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/435 (82%), Positives = 398/435 (91%)

Query: 1   MKSIKVGLLGIGTVGSGTFNVLQRNQEEIARRAGRGIEITMVAARNTARATELTQGKVKV 60
           MK+IKVGLLGIGTVG+GTFNVL+RNQEEI+RRAG GIEI MVA  + ARA EL     +V
Sbjct: 1   MKTIKVGLLGIGTVGAGTFNVLKRNQEEISRRAGHGIEIVMVADLDVARAKELVGSHCEV 60

Query: 61  VNDGNLVVNDPEIDIVVELIGGYDTARDLVMKAIANGKHVVTANKALIATHGNEIFKAAR 120
           VNDGNLVV++PE+DIVVELIGGY  A+DLV+KAIANGKHVVTANKAL+ATHG+EIF+AA+
Sbjct: 61  VNDGNLVVSNPEVDIVVELIGGYGIAKDLVLKAIANGKHVVTANKALLATHGDEIFQAAQ 120

Query: 121 EKGVIVAFEAAVAGGIPIIKALREGLTANRIQWVAGIINGTTNFILSEMRDKGLDFDVVL 180
            KGV+VA+EAAVAGGIPIIKALREGLTANRI+W+AGIINGTTNFILSEMRDKGLDFD VL
Sbjct: 121 NKGVMVAYEAAVAGGIPIIKALREGLTANRIEWIAGIINGTTNFILSEMRDKGLDFDTVL 180

Query: 181 KEAQRLGYAEADPTFDIEGVDAAHKLTIMASIAFGIPVQFDKAYVEGITKLQASDITYAE 240
           KEAQRLGYAEADPTFDIEGVDAAHK T+MA+IAFGIPVQFDKA+VEGITKL+A DI YAE
Sbjct: 181 KEAQRLGYAEADPTFDIEGVDAAHKATLMAAIAFGIPVQFDKAHVEGITKLEAVDIRYAE 240

Query: 241 QLGYRIKLLGITRQTAKGIELRVHPTLIPASRLIANVEGAMNAVVVRGDAVGEALYYGKG 300
           QLGYRIKLLGI ++T++GIELRVHPTLIPA RLIANVEGAMNAV+V+GDAVG  LYYGKG
Sbjct: 241 QLGYRIKLLGIAKRTSQGIELRVHPTLIPAKRLIANVEGAMNAVLVQGDAVGATLYYGKG 300

Query: 301 AGSEPTASAVIADLVDITRLATADPEHHVPSLAFQLNAMADTPVLPMSEVVTSYYLRIRV 360
           AG+EPTASAVIADLVDI RLA ADP H VP LAFQ NAMADTP+LP+SEV TSYYLR+ V
Sbjct: 301 AGAEPTASAVIADLVDIARLADADPAHRVPHLAFQPNAMADTPILPISEVTTSYYLRMHV 360

Query: 361 ADQAGVLADVTRILADSTISIDAMLQKEPAQGEQQTDIIMLTHQTQEKNIEAAIAKIEAL 420
           AD+ GVLA+VT ILADSTISIDAMLQKEPA GE QTDIIMLTHQTQEKN+EAAI KIEAL
Sbjct: 361 ADKLGVLANVTSILADSTISIDAMLQKEPALGETQTDIIMLTHQTQEKNVEAAIKKIEAL 420

Query: 421 STVVGQVTKIRLEEL 435
            TV+GQVTKIRLE L
Sbjct: 421 PTVMGQVTKIRLEHL 435


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.134    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 961,356
Number of extensions: 40415
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 350
Effective length of database: 903,079
Effective search space: 316077650
Effective search space used: 316077650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)