BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1945.p (409 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980088|ref|YP_001353001.1| aminotransferase AlaT [Janthino... 761 0.0 gi|152979970|ref|YP_001354027.1| aspartate/tyrosine/aromatic ami... 104 1e-23 gi|152979845|ref|YP_001353758.1| N-succinyldiaminopimelate amino... 87 3e-18 gi|152979817|ref|YP_001353073.1| AspB aspartate aminotransferase... 74 2e-14 gi|152980149|ref|YP_001354362.1| histidinol-phosphate aminotrans... 58 1e-09 >gi|152980088|ref|YP_001353001.1| aminotransferase AlaT [Janthinobacterium sp. Marseille] Length = 407 Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/407 (87%), Positives = 384/407 (94%) Query: 1 VRPIQKSKKLADVCYDIRGPVLEKARQMEEEGHKIIKLNIGNLAAFGFDAPDEIVQDMIR 60 +RPIQKSKKL DVCYDIRGPVLEKARQMEE+GHKIIKLNIGNLA FGFDAPDEIVQDMIR Sbjct: 1 MRPIQKSKKLDDVCYDIRGPVLEKARQMEEDGHKIIKLNIGNLAVFGFDAPDEIVQDMIR 60 Query: 61 NMGNASGYTDSKGLFAPRKSVMHYTQQKKIEGVTIDDVYLGNGASELIVMSVNALLNTGD 120 NM NASGYTDSKGLFAPRK++MHYTQ+KKI GVTIDD+YLGNGASELIVMS+NALLNTGD Sbjct: 61 NMSNASGYTDSKGLFAPRKAIMHYTQEKKITGVTIDDIYLGNGASELIVMSMNALLNTGD 120 Query: 121 EVLVPSPDYPLWTAAVSLSGGTPVHYVCDEQQGWQPDIADIKKKITPNTKAIVVINPNNP 180 EVLVPSPDYPLWTAAVSLSGG PVHYVCDEQ W PDI DIK KI NTKAIVVINPNNP Sbjct: 121 EVLVPSPDYPLWTAAVSLSGGKPVHYVCDEQADWFPDIEDIKSKINSNTKAIVVINPNNP 180 Query: 181 TGALYSVEVLKEIIELARQHQLIILADEIYDKVLYDGNTHTSLASLADDVLFITFNGLSK 240 TGALY VE+L++I+E+ARQHQLI+ ADEIYDKVLYDGNTHTSLASLADDVLFITFNGLSK Sbjct: 181 TGALYPVELLEQIVEVARQHQLIVFADEIYDKVLYDGNTHTSLASLADDVLFITFNGLSK 240 Query: 241 NYRSCGYRAGWMVVSGEKKHARDYIEGLNMLASMRLCANAPGQFAIQTALGGYQSINDLV 300 NYRSCGYRAGWMVVSGEK+HARDYIEGLNMLASMRLCAN PGQ+AIQTALGGYQSINDLV Sbjct: 241 NYRSCGYRAGWMVVSGEKRHARDYIEGLNMLASMRLCANVPGQYAIQTALGGYQSINDLV 300 Query: 301 APNGRLTKQRDLAHKLLTDIPGVTCVKPKSALYMFPRLDPEIYPIKDDQEFAYELLAEEK 360 AP GRL +QRDLAHKLLT+IPGVTCVKPKSALYMFPRLDP++YPIKDDQ+FA +LL EE Sbjct: 301 APGGRLLRQRDLAHKLLTEIPGVTCVKPKSALYMFPRLDPKMYPIKDDQDFAQQLLVEES 360 Query: 361 VLIVQGTGFNCPTPDHFRVVFLPNTDDLSESMGRIAHFLEGYRRRHG 407 VLIVQGTGFNCPT DHFRVVFLPN+DDL+ ++GRIAHFLEGYR+R G Sbjct: 361 VLIVQGTGFNCPTTDHFRVVFLPNSDDLTVAVGRIAHFLEGYRKRLG 407 >gi|152979970|ref|YP_001354027.1| aspartate/tyrosine/aromatic aminotransferase [Janthinobacterium sp. Marseille] Length = 393 Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 99/379 (26%), Positives = 176/379 (46%), Gaps = 23/379 (6%) Query: 25 ARQMEEEGHKIIKLNIGNLAAFGFDAPDEIVQDMIRNMGNAS-GYTDSKGLFAPRKSVMH 83 A ++E +G II + IG F A ++ R M + YT + GL R ++ Sbjct: 27 AAELERQGRHIIHMGIGEP---DFTAAQPVIDAATRAMADGKLQYTSATGLPELRAAIAA 83 Query: 84 YTQQKKIEGVTID--DVYLGNGASELIVMSVNALLNTGDEVLVPSPDYPLWTAAVSLSGG 141 + Q + G+ ID + + GAS ++++ AL+ +VL+ P YP V+ G Sbjct: 84 HYQ--AVYGIEIDPARIIVTAGASAALLLACAALVEKDAQVLMSDPSYPCNRHFVAAFDG 141 Query: 142 TPVHYVCDEQQGWQPDIADIKKKITPNTKAIVVINPNNPTGALYSVEVLKEIIELARQHQ 201 + +Q A +++ T+ +++ +P+NPTG + L++I+E+ R Q Sbjct: 142 QAKMIASGPEHRFQLSAAMVEQNWCAQTRGVLLASPSNPTGTSIEADELRKIVEVVRAKQ 201 Query: 202 LIILADEIYDKVLYDGNTHTSLASLADDVLFITFNGLSKNYRSCGYRAGWMVVSGEKKHA 261 + DEIY+ + YD ++L SL +DV+ I N SK + G+R GW+VV E Sbjct: 202 GFTIVDEIYNGLRYDAEPFSAL-SLGEDVIVI--NSFSKYFNMTGWRLGWLVVPPE---- 254 Query: 262 RDYIEGLNMLA-SMRLCANAPGQFAIQTALGGYQSINDLVAPNGRLTKQRDLAHKLLTDI 320 ++ + LA ++ +CA++ Q A A +++ A ++RD L + Sbjct: 255 --LVQAIEKLAQNLFICASSLAQHA-GLACFEPEALAIYEARKAEFKRRRDYIVPALEGL 311 Query: 321 PGVTCVKPKSALYMFPRLDPEIYPIKDDQEFAYELLAEEKVLIVQGTGFNCPTPDHF-RV 379 V P A Y++ D + DQ ++L E V+IV G F T + RV Sbjct: 312 GFKVPVMPDGAFYVYA--DCSAWSDDADQ-LTVDILNEAGVVIVPGLDFGPSTAHQYVRV 368 Query: 380 VFLPNTDDLSESMGRIAHF 398 + + ++L E++ R+ F Sbjct: 369 SYATSMENLQEAVARLRAF 387 >gi|152979845|ref|YP_001353758.1| N-succinyldiaminopimelate aminotransferase [Janthinobacterium sp. Marseille] Length = 386 Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 81/368 (22%), Positives = 160/368 (43%), Gaps = 36/368 (9%) Query: 51 PDEIVQDMIRNMGNASGYTDSKGLFAPRKSVMHYTQQK----KIEGVTIDDVYLGNGASE 106 P I + + N+ + Y + G A R ++ + +++ K+ T V NG+ E Sbjct: 26 PAFIQKALADNLDGLATYPTTAGTDALRATIAGWLERRYNLPKLNPAT--QVLPVNGSRE 83 Query: 107 LIVMSVNALLNTGDEVLV--PSPDYPLWTAAVSLSGGTPVHYVCDEQQGWQPDIADIKKK 164 + +++ + LV P+P Y ++ A L+G P CD + + PD A + + Sbjct: 84 ALFALAQTVIDPSKQALVVCPNPLYQIYEGAAYLAGAEPYFVNCDPARNFAPDFASVPPE 143 Query: 165 ITPNTKAIVVINPNNPTGALYSVEVLKEIIELARQHQLIILADEIYDKVLYDGNTHTSLA 224 + + + + +P NP GA+ +++ E+ L+ ++ +I ADE Y ++ + Sbjct: 144 VWARVQLVYICSPGNPAGAVLTLDDWAELFALSDRYGFVIAADECYSEIYFKAEAPLGGL 203 Query: 225 SLADDV------LFITFNGLSKNYRSCGYRAGWMVVSGEKKHARDYIEGLNMLASMRLCA 278 A + I F+ LSK G R+G+ V+G+ + I+ + + A Sbjct: 204 EAAHKLGREGYPRLIGFSSLSKRSNVPGMRSGF--VAGDA----NIIKSFLLYRTYHGSA 257 Query: 279 NAPGQFAIQTA-LGGYQSINDLVAPNGRLTKQRDLAHKLLTDIPGVTCVKPKSALYMFPR 337 +P ++Q+A + + ++ + K+ LL ++ V+ P + Y++ R Sbjct: 258 MSP---SVQSASIAAWNDEQHVIENREKYVKKFKQVTPLLQEVMDVSL--PDAGFYLWAR 312 Query: 338 LDPEIYPIKDDQEFAYELLAEEKVLIVQGT-------GFNCPTPDHFRVVFLPNTDDLSE 390 +D + D EFA L AE V ++ G+ G N P + R+ + D+ E Sbjct: 313 VDKLV--DISDVEFAKRLYAEYNVTVLPGSYLGREAHGIN-PGQNRIRMALVAEVDECLE 369 Query: 391 SMGRIAHF 398 + RI F Sbjct: 370 AAQRIVEF 377 >gi|152979817|ref|YP_001353073.1| AspB aspartate aminotransferase [Janthinobacterium sp. Marseille] Length = 393 Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 45/195 (23%), Positives = 100/195 (51%), Gaps = 11/195 (5%) Query: 96 DDVYLGNGASELIVMSVNALLNTGDEVLVPSPDYPLWTAAVSLSGGTPVHYVCD-EQQGW 154 +++ + GA++ ++ +++ + GDEV+V P + + A++L+GG V + + G+ Sbjct: 98 NEITVTAGATQALLTAIHCCIRPGDEVIVIEPAFDSYLPAIALAGGKAVCVQMELDDNGY 157 Query: 155 QPDIADIKKKITPNTKAIVVINPNNPTGALYSVEVLKEIIELARQHQLIILADEIYDKVL 214 A + ++ T+ I++ +P+NPTG++ ++ + ++ R +++L+DE+Y+ ++ Sbjct: 158 IVPWAKVAAAVSSKTRLIMINSPHNPTGSVLLPADMQALADIVRGSDILLLSDEVYEHMV 217 Query: 215 YDGNTHTSLA---SLADDVLFITFNGLSKNYRSCGYRAGWMVVSGEKKHARDYIEGLNML 271 YDG H S++ LA ++ G K Y G++ G++ + N+ Sbjct: 218 YDGIPHESVSRHPELAARTFVVSSFG--KTYHVTGWKIGYVAAPAALTAEFRKVHQYNVF 275 Query: 272 ASMRLCANAPGQFAI 286 + N P Q AI Sbjct: 276 S-----VNTPMQHAI 285 >gi|152980149|ref|YP_001354362.1| histidinol-phosphate aminotransferase [Janthinobacterium sp. Marseille] Length = 368 Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/234 (24%), Positives = 100/234 (42%), Gaps = 14/234 (5%) Query: 20 PVLEKARQMEEEGHKIIKLNIGNLAAFGFDAPDEIVQDMIRNMGNASGYTDSKGLFAPRK 79 P+ E AR+ + KI+KL N G P+ Q M + +A Y D G Sbjct: 21 PIAEVAREFGLDEAKIVKL-ASNENPLGM--PESAKQAMAAAIADAGRYPDGNGFELKAA 77 Query: 80 SVMHYTQQKKIEGVTIDDVYLGNGASELIVMSVNALLNTGDEVLVPSPDYPLWTAAVSLS 139 Y GV + + LGNG+++++ +S +A + G V+ + ++ A Sbjct: 78 LTAKY-------GVPAEWITLGNGSNDILELSAHAFVQPGQSVIYAQYSFAVYPLAAQAV 130 Query: 140 GGTPVHYVCDEQQGWQPDIADIKKKITPNTKAIVVINPNNPTGALYSVEVLKEIIELARQ 199 G + + + D+ + I +T+ I V NPNNPTG E ++ ++ Sbjct: 131 GARSLVIAAKD---FGHDLDAMADAIEADTRLIFVANPNNPTGTFIPGEQIESFLKRVPP 187 Query: 200 HQLIILADEIYDKVLYDGNTHTSLASLADDVLFITFNGLSKNYRSCGYRAGWMV 253 +++L DE Y + L + S+A +A + +SK Y G R G+ + Sbjct: 188 EVVVVL-DEAYTEFLAPEQQYDSIAWVAKYPNLLVSRSMSKVYGLAGLRIGYGI 240 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.137 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 991,314 Number of extensions: 41558 Number of successful extensions: 145 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 143 Number of HSP's successfully gapped: 7 Length of query: 409 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 324 Effective length of database: 906,776 Effective search space: 293795424 Effective search space used: 293795424 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)