BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1941.p
         (373 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982957|ref|YP_001353966.1| spore coat biosynthesis protein...   137   7e-34
gi|152983114|ref|YP_001353970.1| DegT/DnrJ/EryC1/StrS aminotrans...    80   2e-16

>gi|152982957|ref|YP_001353966.1| spore coat biosynthesis protein
           [Janthinobacterium sp. Marseille]
          Length = 363

 Score =  137 bits (346), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 177/375 (47%), Gaps = 29/375 (7%)

Query: 4   PFLPFAKPTIDEATITAVGEVLRSGWITSGPKVQAFEKALSDYLGGRIVRTFNSGTCTME 63
           P+L FA+   +        E+  +G  T G  V+A  + L +Y G +      S T  + 
Sbjct: 9   PYLQFAEVEAE------FREIFENGMFTRGQHVEALRQELKEYTGAKHAFLATSATTALW 62

Query: 64  IALRIAGIGPGDEVITTPISWVATANVILETGATPVFADIDPVTRNIDLDQLEAAITPHT 123
             +++  I  GDEVI +  SW ATANV+ + GA PVFAD+   T N+  + LE+ I   T
Sbjct: 63  TCMKLLDIKQGDEVIVSDFSWPATANVVEDMGARPVFADVSLETFNMLPEDLESKINART 122

Query: 124 KAVIPVYLSGLPVDMDRLYAIAAKHQLRVVEDAAQALGSTWNGKRIGAFGDFVSFSLQAN 183
           KAVI V   G P  +  +  I  +H + ++EDAA A+GS+  G+R G+  D   FS    
Sbjct: 123 KAVIFVDALGNPSGLSEIKKICERHGVPLIEDAACAIGSSEFGRRCGSIADITCFSFHPR 182

Query: 184 KNITSSEGGFLVLNNAEEARLAEKYRLQGVTRSGFDGLEVDLL--GGKFNMTDVAAAIGL 241
           K I + EGG ++ +  + A+  E     GV  SG  G  VD +  G  F + ++AA +G 
Sbjct: 183 KLINTGEGGAILTDRDDWAQWLEIKLGAGV--SGMKGPGVDFVDFGYNFRLPEMAALMGR 240

Query: 242 GQFAHVDAVTAHRKELARHY---FACFGHDFEANYGAQLPVADFENSNWHMFQLVLPERI 298
            Q A ++++   R E+   Y    A  G+  +        + D    N       +P  I
Sbjct: 241 RQLAKLESIVDERNEIRSLYVEKLAPLGYTVQK-------INDGVRHNIQSLVFRVPNDI 293

Query: 299 TRAAFMEKMVEKQIGIGYHYPAIHL-LKLYRERGFKEGMFPV-AERVGQRIVSLPMFNAM 356
           +R + + ++  K +GI        L    Y E  + +G  P  ++++ +  ++LP +   
Sbjct: 294 SRDSVIREL--KNVGIESTIGTYALGSTTYYESKYSQG--PANSKKLFESTLTLPCY--- 346

Query: 357 RKEDVERSVETVKSV 371
           R  DV R    + S+
Sbjct: 347 RDVDVSRVARAIASI 361


>gi|152983114|ref|YP_001353970.1| DegT/DnrJ/EryC1/StrS
           aminotransferase family protein [Janthinobacterium sp.
           Marseille]
          Length = 373

 Score = 80.1 bits (196), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 156/355 (43%), Gaps = 19/355 (5%)

Query: 23  EVLRSG-WITSGPKVQAFEKALSDYLGGRIVRTFNSGTCTMEIALRIAGIGPGDEVITTP 81
           E + SG     G +V+  EK L + LG        +GT  +++ALR  G+G GD V+   
Sbjct: 24  EAMSSGAQFIGGIEVETLEKRLVETLGVSYAVGCANGTDALQLALRALGVGAGDTVLVPN 83

Query: 82  ISWVATANVILETGATPVFADIDPVTRNIDLDQLEAA-ITPHTKAVIPVYLSGL-PVDMD 139
            ++ AT   ++  GA+P   D++     +DL+  E A +    KA + V+L G     ++
Sbjct: 84  ATFWATFEAVVNVGASPATVDVNIADGGVDLNAFEQALVEAKPKAAMIVHLYGWGSARLN 143

Query: 140 RLYAIAAKHQLRVVEDAAQALGSTWNGKRIGAFGDFVSFSLQANKNITSSEGGFLVLNNA 199
            L ++  KH + ++ED AQ  G  +  + I       + S    K + ++  G  V  N 
Sbjct: 144 ELRSLCLKHSVPLLEDGAQCFGVKYQDESIFKGAHISTTSFYPAKVLGAAGDGGAVFTN- 202

Query: 200 EEARLAEKY-RLQGVTRSGFDGLEVDLLGGKFNMTDVAAAIGLGQFAHVDAVTAHRKELA 258
            +  LA+K  RL    R+   G     +G    +  + AA       ++DA    R++ A
Sbjct: 203 -DPVLADKVRRLGNHGRTAHYGY--GDVGWNSRLDALQAAFLNISLDYIDARIESRQKSA 259

Query: 259 RHYFACFGHDFEANYGAQLPVADFENSNWHMFQLVLPERITRAAFMEKMVEKQIGIGYHY 318
             Y         A   A + V +    N +    ++P++  ++   + + E+ IG G  Y
Sbjct: 260 SFYR----EQLPAVGLAPMSVPEGYTENGYCNVCLVPDKNEKSKLEKLLKERSIGFGNIY 315

Query: 319 PAIHLLKL----YRERGFKEGMFPVAERVGQRIVSLPMFNAMRKEDVERSVETVK 369
           P +   ++    Y +  +       A  + + +++LP+F  M  E++E  +  V+
Sbjct: 316 PGVMSAQVGAAPYLKAQYGGSQ---ANVLCESVLNLPLFPYMTSEELEYVISAVR 367


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 912,777
Number of extensions: 40387
Number of successful extensions: 105
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 2
Length of query: 373
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 288
Effective length of database: 906,776
Effective search space: 261151488
Effective search space used: 261151488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)