BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1939.p
         (305 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979922|ref|YP_001351834.1| methionyl-tRNA formyltransferas...    84   1e-17
gi|152980492|ref|YP_001354260.1| phosphoribosylglycinamide formy...    59   5e-10

>gi|152979922|ref|YP_001351834.1| methionyl-tRNA formyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 316

 Score = 84.0 bits (206), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 105/238 (44%), Gaps = 13/238 (5%)

Query: 23  GVQVSLVVTHEDSAT---ENIWFGSVAGVCREHGIPCITPT----DPKSQQLLAQVQAMQ 75
           G ++ LV+T  D        +   +V      H IP   P     D K  ++ A+  A+ 
Sbjct: 23  GFEIPLVLTQPDRPAGRGMQLHASAVKQFALAHDIPVAQPVSLRLDGKYPEVAAEAHALL 82

Query: 76  P----DFIFSFYYRHMLPVEVLAAAKRGAYNMHGSLLPKYRGRVPINWAVLRGETETGAT 131
                D +    Y  +LP  +L    RG  N+H SLLP++RG  PI+ A+  G+ ETG T
Sbjct: 83  KATPHDVMVVAAYGLILPQSILDIPPRGCINIHASLLPRWRGAAPIHRAIESGDAETGVT 142

Query: 132 LHEMTAKPDAGAIVAQTAVPILPDDTAHEVFGKVVVAAEMTLWKVLPAMLAGNTPKLPND 191
           + +M    D G ++A   +PI  DDT   +  K+       + + L  M  G+ P  P  
Sbjct: 143 IMQMELGLDTGPMLAMQRLPITADDTTASLHDKLATLGGEMIVQTLRRMEQGDLPAEPQP 202

Query: 192 LTQGSYFSGRKPEDGRIDWRRTAGEVHNLVRAVAPPYPGAFEEIAGDKITVTRTRLVP 249
               +Y +    E+  +D+ + A ++   +RA   P+PGA     G  I     + VP
Sbjct: 203 -DGANYAAKILKEEATLDFTQPAEQLARKIRAFN-PFPGAAATCDGTLIKFWHAQAVP 258


>gi|152980492|ref|YP_001354260.1| phosphoribosylglycinamide
           formyltransferase [Janthinobacterium sp. Marseille]
          Length = 209

 Score = 58.5 bits (140), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 7/123 (5%)

Query: 51  EHGIP--CITPTDPKSQQ-----LLAQVQAMQPDFIFSFYYRHMLPVEVLAAAKRGAYNM 103
           EHGI    +   D  S++     L +++ +  PD +    +  +L    +A       N+
Sbjct: 49  EHGISTLVVANKDYPSREAFDAALQSKIDSFMPDLVVLAGFMRVLTTPFVAHYADRMLNI 108

Query: 104 HGSLLPKYRGRVPINWAVLRGETETGATLHEMTAKPDAGAIVAQTAVPILPDDTAHEVFG 163
           H SLLP + G      A+  G    GAT+H +TA+ D G IVAQ AVP+L DDT   +  
Sbjct: 109 HPSLLPSFVGLATHRQALAAGVKLHGATVHFVTAELDHGPIVAQAAVPVLADDTEESLAA 168

Query: 164 KVV 166
           +V+
Sbjct: 169 RVL 171


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 776,669
Number of extensions: 33619
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 3
Length of query: 305
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 222
Effective length of database: 914,170
Effective search space: 202945740
Effective search space used: 202945740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)