BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1935.p
         (567 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981027|ref|YP_001352998.1| ATPase related to phosphate sta...   927   0.0  
gi|152980436|ref|YP_001352120.1| phosphate starvation inducible ...   107   2e-24

>gi|152981027|ref|YP_001352998.1| ATPase related to phosphate
           starvation-inducible protein PhoH [Janthinobacterium sp.
           Marseille]
          Length = 555

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/568 (80%), Positives = 505/568 (88%), Gaps = 14/568 (2%)

Query: 1   MPLPKMPSKPASMLSPEDYPKADRNKPVKPNITLVETSAPVVAPQEVAVAVVDVSDTKVA 60
           MPLPK+P+KPA++LSP+DYPKAD++K VK ++TL+E   PV    E A          V 
Sbjct: 1   MPLPKLPTKPAALLSPQDYPKADKDKIVK-SLTLIE---PVARKTEAA---------PVP 47

Query: 61  AP-RARITGKTAAVTEKPKTAPKSVETRSKSTTSRVADKLGKSKLFVLDTNVLMHDPTSL 119
           AP RA+I  KT A   +  ++ ++V    KS T R  DK G +KLFVLDTNVLMHDPTSL
Sbjct: 48  APVRAKIADKTPATKPRAASSAQTVALAPKSGTRRPTDKSGVTKLFVLDTNVLMHDPTSL 107

Query: 120 FRFEEHDIYLPMVTLEELDNHKKGMSEVARNARQISRSLDALVSDIAEDAIDLGIPLSKL 179
           FRFEEHD+YLPM+TLEELD+HKKGMSEVAR+ARQ+SRSLDALVS + E+AID GIPLSKL
Sbjct: 108 FRFEEHDVYLPMMTLEELDDHKKGMSEVARSARQVSRSLDALVSGVEENAIDEGIPLSKL 167

Query: 180 GNKDAKGRLYFQTKLQNAALPEGLPEGKADNQILGVVRALDQQYPERPVVLVSKDINMRL 239
           GNKDAKGRL+FQTKLQN  LPEGLP GKADNQILGVVRAL+ QYP R +VLVSKDINMR+
Sbjct: 168 GNKDAKGRLFFQTKLQNVTLPEGLPMGKADNQILGVVRALEAQYPGRAIVLVSKDINMRI 227

Query: 240 KARAIGLPAEDYFNDHVLEDTDLLYSGIQQLPDDFWTKHGKGMESWQESRHGSSYTYYRV 299
           KARA+GLPAE+Y NDHVLEDTDLLYSGI QLPDDFW KH KGMESWQE++HG+ YT+YR+
Sbjct: 228 KARAMGLPAEEYLNDHVLEDTDLLYSGIMQLPDDFWIKHAKGMESWQENKHGTGYTFYRL 287

Query: 300 TGPYVPSLLVNQFVFIEPKNGEPAFYGQVSQINGKTAVLQTLRDFGHAKNSVWGITARNR 359
           +GP VPS+LVNQFV++EP+NGE +FYGQV QINGKTAV+QTLRD+ H KNSVWG+TARNR
Sbjct: 288 SGPVVPSMLVNQFVYMEPQNGEASFYGQVRQINGKTAVIQTLRDYAHTKNSVWGVTARNR 347

Query: 360 EQNFALNLLMNPECDFVTLLGQAGTGKTLLALASGLAQVLETKLYNEIIVTRVTVPVGED 419
           EQNFALNLLM+PECDFVTLLGQAGTGKTLLALA+GLAQVLETKLY+EIIVTRVTVPVGED
Sbjct: 348 EQNFALNLLMDPECDFVTLLGQAGTGKTLLALAAGLAQVLETKLYSEIIVTRVTVPVGED 407

Query: 420 IGFLPGTEEEKMGPWMGAFDDNLEVLNKSDGDAGEWGRAATQDLIRSRIKIKSLNFMRGR 479
           IGFLPGTEEEKM PWMGAFDDNLEVLNKSD DAGEWGRAATQDLIRSRIKIKSLNFMRGR
Sbjct: 408 IGFLPGTEEEKMSPWMGAFDDNLEVLNKSDNDAGEWGRAATQDLIRSRIKIKSLNFMRGR 467

Query: 480 TFVNKFLIIDEAQNLTPKQMKTLVTRAGPGTKIVCLGNIAQIDTPYLTEGSSGLTYVVDR 539
           TFVNKFLIIDEAQNLTPKQMKTLVTRAGPGTKI+CLGNIAQIDTPYLTEGSSGLTYVVDR
Sbjct: 468 TFVNKFLIIDEAQNLTPKQMKTLVTRAGPGTKIICLGNIAQIDTPYLTEGSSGLTYVVDR 527

Query: 540 FKGWAHSGHVTLARGERSRLADHASDVL 567
           FKGW HSGHVTLARGERSRLADHAS+VL
Sbjct: 528 FKGWGHSGHVTLARGERSRLADHASEVL 555


>gi|152980436|ref|YP_001352120.1| phosphate starvation inducible
           protein phoH [Janthinobacterium sp. Marseille]
          Length = 356

 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 92/171 (53%), Gaps = 13/171 (7%)

Query: 372 ECDFVTLLGQAGTGKTLLALASGLAQVLETKLYNEIIVTRVTVPVGEDIGFLPGTEEEKM 431
           E D    +G AGTGKT LA+A  +   LE      I++TR  V  GE +GFLPG   +K+
Sbjct: 143 EHDITFGVGPAGTGKTYLAVACAV-DALERDAVKRIVLTRPAVEAGERLGFLPGDLSQKI 201

Query: 432 GPWMGAFDDNLEVLNKSDGDAGEWGRAATQDLIRSR-IKIKSLNFMRGRTFVNKFLIIDE 490
            P++    D L  L          G   TQ +   + I+I  L +MRGRT  + F+I+DE
Sbjct: 202 DPYLRPLYDALYDL---------LGFDRTQKMFEKQAIEIAPLAYMRGRTLNHAFVILDE 252

Query: 491 AQNLTPKQMKTLVTRAGPGTKIVCLGNIAQIDTPYLTEGSSGLTYVVDRFK 541
           AQN TP+QMK  +TR G G+K V  G+I QID  +     SGL   +D  K
Sbjct: 253 AQNTTPEQMKMFLTRIGFGSKAVITGDITQIDLQH--NQKSGLVEAIDVLK 301


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,264,329
Number of extensions: 52355
Number of successful extensions: 165
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 2
Length of query: 567
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 479
Effective length of database: 895,685
Effective search space: 429033115
Effective search space used: 429033115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)