BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1932.p
         (478 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979846|ref|YP_001352995.1| replicative DNA helicase [Janth...   825   0.0  

>gi|152979846|ref|YP_001352995.1| replicative DNA helicase
           [Janthinobacterium sp. Marseille]
          Length = 461

 Score =  825 bits (2130), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/460 (89%), Positives = 439/460 (95%), Gaps = 3/460 (0%)

Query: 19  SDPQIDALRVPPHSIEAEQSVLGGLLLDNAAWDRIADFVSADDFYRYDHRIIFEHIVKLI 78
           +DPQ+++LRVPPHSIEAEQSVLGGLLLDNAAWDRIADFV+ DDFYRYDHRIIF+HIVKLI
Sbjct: 5   ADPQLESLRVPPHSIEAEQSVLGGLLLDNAAWDRIADFVNHDDFYRYDHRIIFQHIVKLI 64

Query: 79  NSTKPADVITVYEAMSTSGKAEEVGGLVYLNALAQNTPSAANIRRYAEIVRDRGILRKLI 138
           N+ +PADVITV+EA++ SGKAEEVGG+ YLNALAQNTPSAANIRRYAEIVRDRG+LRKLI
Sbjct: 65  NNARPADVITVFEALTNSGKAEEVGGVAYLNALAQNTPSAANIRRYAEIVRDRGVLRKLI 124

Query: 139 TVADEISGNAFNPQGKDVKSMLDEAESKIFAIAEEGSRGSQGFMEIQPLLTQVVERIDEL 198
           TV+DEISGNAFNPQGK+VK MLDEAESKIFAIAEEG+RG+QGF EIQPLLTQVVERIDEL
Sbjct: 125 TVSDEISGNAFNPQGKEVKQMLDEAESKIFAIAEEGARGAQGFQEIQPLLTQVVERIDEL 184

Query: 199 YNRDSSSDITGVPTGFMDLDKMTSGLQPGDLIIVAGRPSMGKTAFSINIGEHVAIESGLP 258
           YNRDS+SDITGVPTGF DLD+MTSGLQPGDLIIVAGRPSMGKTAFSINIGE VAIESGLP
Sbjct: 185 YNRDSTSDITGVPTGFADLDRMTSGLQPGDLIIVAGRPSMGKTAFSINIGETVAIESGLP 244

Query: 259 VAVFSMEMGGAQLAMRMLGSVGRLDQHRLRTGRLLDEDWPRLTHAIQKMNDAQFYIDETP 318
           VAVFSMEMGGAQLAMRMLGSVGRLDQHRLRTGRL DEDWPRLTHAIQKMNDAQ YIDETP
Sbjct: 245 VAVFSMEMGGAQLAMRMLGSVGRLDQHRLRTGRLADEDWPRLTHAIQKMNDAQLYIDETP 304

Query: 319 ALSPIELRARSRRLARQCGKLGLIIIDYLQLMSGNGGSSSENRASEISEISRSLKGLAKE 378
           AL+ IELRARSRRL+RQCGKLGLIIIDYLQLMS N  S+ ENRA+EISEISRSLKGLAKE
Sbjct: 305 ALNSIELRARSRRLSRQCGKLGLIIIDYLQLMSAN--SAGENRATEISEISRSLKGLAKE 362

Query: 379 LNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVYNPDSPDKGTA 438
           LNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVYNPDSPDKGTA
Sbjct: 363 LNCPVIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDADVILFIYRDEVYNPDSPDKGTA 422

Query: 439 EIIIGKQRNGPIGSIRLSFLGMYTKYDNYIGNLAQPYGGD 478
           EIIIGKQRNGPIG++RL+FLG YTK++NY G+ A  Y GD
Sbjct: 423 EIIIGKQRNGPIGAVRLTFLGQYTKFENYTGSAAL-YQGD 461


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,122,767
Number of extensions: 48214
Number of successful extensions: 150
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 391
Effective length of database: 899,382
Effective search space: 351658362
Effective search space used: 351658362
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)