BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1926.p
         (662 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982107|ref|YP_001352212.1| hypothetical protein mma_0522 [...    67   3e-12

>gi|152982107|ref|YP_001352212.1| hypothetical protein mma_0522
           [Janthinobacterium sp. Marseille]
          Length = 699

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 122/291 (41%), Gaps = 1/291 (0%)

Query: 40  DNRKTDEAKALCTAVLARVPKLVFANHARGLIAMQEGKFAEAEQYLRLAIEADPNNAEYI 99
           D  +  +A+ LC  VL   P    A H  GLIA   G+   A  +LR A +A    A Y 
Sbjct: 28  DAGQAQQAEMLCRHVLLAWPYQADAMHLLGLIAHAHGRLDMAVSHLRQACQAPHAPAIYF 87

Query: 100 GNLASSILSQDRIDEAIALYEQAISIDKENRAARIGLANALHEKNDPDASIAYFEDAVKR 159
            NLA        + EA    ++A+S+      A   L   L E    +AS+   E A+  
Sbjct: 88  SNLAEMCRQSGLLVEAEQAGQRAVSLAPNLADAWNNLGIILQESGKLEASLDSLERALAL 147

Query: 160 EPNAPGPLSHLGRALVEARRFEEAVATILKSLELQINFAPSHTALGEAFHAMEMYKEAVE 219
            PN     ++LG       R E+A     K+LEL+  +A  H+ L    +    ++EA  
Sbjct: 148 RPNDARAHNNLGNTWRRLYRLEQAEQHYQKALELEPGYAEVHSNLAYLLNTHGRFEEAAA 207

Query: 220 SHKTAVLLDPQDTYAHNKIADSYLKLNKIEQAHEHMLRVIEIAPKDPNSYVKLGSSYFST 279
           + + A+ L PQ   A+  +AD  +   +  +A   +  +   AP+    +    +     
Sbjct: 208 AARHAISLQPQLVDAYLNLADIEVSRLRYAEALRSLDALYTFAPQHVGGF-SARAQILRK 266

Query: 280 GDRFDDAMRMFNKALELDPKYALTYNNIGAIQHDHGDTDDAIANFRKALEL 330
            +R ++A+    +AL   P  A  +   G I    G  D+A+  F KA  L
Sbjct: 267 MERNEEALIWAQRALISAPDNANAHYAHGQILQALGRHDEALLAFDKAAAL 317


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,502,777
Number of extensions: 62450
Number of successful extensions: 228
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 2
Length of query: 662
Length of database: 1,221,021
Length adjustment: 89
Effective length of query: 573
Effective length of database: 891,988
Effective search space: 511109124
Effective search space used: 511109124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)