BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1925.p
         (362 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980284|ref|YP_001353140.1| flagellin type B [Janthinobacte...   199   3e-52

>gi|152980284|ref|YP_001353140.1| flagellin type B
           [Janthinobacterium sp. Marseille]
          Length = 507

 Score =  199 bits (505), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 124/219 (56%), Positives = 141/219 (64%), Gaps = 27/219 (12%)

Query: 1   MAAVINTNIPSLNTQRNLNASQSSLNTSIQRLSSGLRVNSAKDDAAGLAIADRMNSQIKG 60
           MAAVINTNI SLN+QRNL ASQSSL TS+QRLSSGLR+NSAKDDAAGLAI+DRM SQI G
Sbjct: 1   MAAVINTNISSLNSQRNLTASQSSLATSLQRLSSGLRINSAKDDAAGLAISDRMTSQING 60

Query: 61  LAVAQRNANDGISMAQTAEGALSTVGDNLQRMRELAVQAANGTNSAQDRKTLNDEYTQLS 120
           L  A +NANDGISM QTAEG L T  D LQRMR LAVQAANGTNSA DR +L +E  QL 
Sbjct: 61  LTRAAQNANDGISMTQTAEGGLGTATDLLQRMRTLAVQAANGTNSASDRSSLQEEVAQLQ 120

Query: 121 QEVFRVLNGTSFNGQNLFTGTGQGASAGTGSDAANVSASLTLSFQVGANVQDNKLNDQIT 180
           QE+ RV N T FNGQN+  G+   A                  FQVGAN      N  I 
Sbjct: 121 QELNRVANTTQFNGQNVLDGSLSNA-----------------QFQVGANA-----NQTIN 158

Query: 181 ITLDDLSNNSTIATVIGTSAKGLIGLGDTTGVSSAQATY 219
            ++ +     T A+ IG +A      G+T+G SS   T 
Sbjct: 159 FSIGN-----TQASAIGNNAIKTTATGNTSGASSFAGTV 192



 Score =  108 bits (270), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 59/97 (60%), Positives = 78/97 (80%), Gaps = 3/97 (3%)

Query: 266 PSAQSDAQKAIQNLDKAISMISSKRAEFGAVQNRFSAVISNLQVSSENITASRSRIMDTD 325
           PS  +DA   +Q +D A++ ISS RA  GA+QNRF++V+S+L  +SEN++A+RSRI+D D
Sbjct: 413 PSGANDA---LQVIDSALANISSSRASLGALQNRFTSVVSSLSTTSENLSAARSRILDAD 469

Query: 326 YAQETANLTRAQILQQAGTAMLSQANSAPQQVLSLLK 362
           +A ETANLTR QILQQAGTAML+QANS P  VL+LL+
Sbjct: 470 FASETANLTRGQILQQAGTAMLAQANSLPNGVLALLR 506


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.307    0.118    0.297 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 574,339
Number of extensions: 18272
Number of successful extensions: 98
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 2
Length of query: 362
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 278
Effective length of database: 910,473
Effective search space: 253111494
Effective search space used: 253111494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 130 (54.7 bits)