BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1924.p
         (119 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980571|ref|YP_001353139.1| FlaG flagellar protein [Janthin...    76   5e-16

>gi|152980571|ref|YP_001353139.1| FlaG flagellar protein
           [Janthinobacterium sp. Marseille]
          Length = 126

 Score = 76.3 bits (186), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 67/104 (64%), Gaps = 2/104 (1%)

Query: 16  TSYALPKTADKPDPVVSTVAPAANPEARRATESEVNDAVGKLNDFAAANAAALNFSKDQD 75
           +S A P       PV++T A    P+A  A +S+V  A+  +N      ++ L F+ D D
Sbjct: 25  SSTASPAAKGASAPVLTTGA-VQQPDAASA-QSQVGQALQSINKALQGLSSNLEFTVDSD 82

Query: 76  TGKTIIKVVDTATDKVIRQIPSEEAIAIAKSIDKMQGLLIKEKA 119
           + +TI+KVVD  T +VIRQ+PS EAI I+K++DK+QGLL+K+KA
Sbjct: 83  SNRTIVKVVDQQTKEVIRQMPSLEAIEISKALDKLQGLLVKQKA 126


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.308    0.123    0.323 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 244,415
Number of extensions: 8081
Number of successful extensions: 34
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 1,221,021
Length adjustment: 72
Effective length of query: 47
Effective length of database: 954,837
Effective search space: 44877339
Effective search space used: 44877339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 124 (52.4 bits)